OMIA:000373-9031 : Feather colour, dominant white in Gallus gallus (chicken) |
Categories: Pigmentation phene
Links to possible relevant human trait(s) and/or gene(s) in OMIM: 155550 (gene)
Mendelian trait/disorder: yes
Mode of inheritance: Autosomal dominant
Disease-related: no
Key variant known: yes
Year key variant first reported: 2004
Species-specific description: Kerje et al. (2004) showed that three alleles at the Dominant White locus in chickens (namely Dominant white, Dun, and Smoky) are all caused by mutations in the gene for the melanocyte-specific protein PMEL17, which is chickens is called PMEL.
History: This trait was one of the five first animal traits (all in chickens) whose Mendelian inheritance was documented (by Bateson and Saunders, 1902; pages 87-124) after the rediscovery of Mendel's result. The other four traits are Rose-comb (OMIA 000884-9031), Pea-comb (OMIA 000782-9031), Polydactyly (OMIA 000810-9031) and Yellow skin (OMIA 001449-9031).
Molecular basis: Adopting a comparative positional cloning approach (by noting that the chromosomal region to which this trait maps in chickens is orthologous with the region of mouse chromosome MMU 10 that includes the PMEL17 gene which when mutated causes the silver mutation in mice), Kerje et al. (2004) were able to identfy the causal mutation: "The Dominant white allele [is] exclusively associated with a 9-bp insertion in exon 10 [of the PMEL17 gene], leading to an insertion of three amino acids in the PMEL17 transmembrane region. Similarly, a deletion of five amino acids in the transmembrane region occurs in the protein encoded by Dun. The Smoky allele shared the 9-bp insertion in exon 10 with Dominant white, as expected from its origin, but also had a deletion of 12 nucleotides in exon 6, eliminating four amino acids from the mature protein." (Kerje et al., 2004). In chickens, the gene encoding PMEL17 is called PMEL.
Breed:
White Leghorn (Chicken) (VBO_0000646).
Breeds in which the phene has been documented. (If a likely causal variant has been documented for the phene, see the variant table breeds in which the variant has been reported).
Associated gene:
Symbol | Description | Species | Chr | Location | OMIA gene details page | Other Links |
---|---|---|---|---|---|---|
PMEL | premelanosome protein | Gallus gallus | 34 | NC_052565.1 (1343416..1339431) | PMEL | Homologene, Ensembl , NCBI gene |
Variants
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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
OMIA Variant ID | Breed(s) | Variant Phenotype | Gene | Allele | Type of Variant | Source of Genetic Variant | Reference Sequence | Chr. | g. or m. | c. or n. | p. | Verbal Description | EVA ID | Year Published | PubMed ID(s) | Acknowledgements |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
600 | White Leghorn (Chicken) | Feather colour, dominant white | PMEL | I | insertion, small (<=20) | Naturally occurring variant | GRCg6a | 33 | g.7095476_7095477insCTGGGCACC | c.2021_2022insCTGGGCACC | p.(L674_L675insWAP) | ENSGALT00000077972.2; ENSGALP00000051268.2; published as a 9-bp (3aa) insertion (WAP) in exon 10; AY636127 | 2004 | 15579702 | ||
601 | Feather colour, Dun | PMEL | D | delins, small (<=20) | Naturally occurring variant | GRCg6a | 33 | g.7095492_7095507delinsC | c.2037_2052delinsC | p.(L680_A684del) | ENSGALT00000077972.2; ENSGALP00000051268.2; published as "a deletion of five amino acids [LGTAA] in the transmembrane region"; AY636129 | 2004 | 15579702 | |||
602 | White Leghorn (Chicken) | Feather colour, Smoky | PMEL | S | deletion, small (<=20) | Naturally occurring variant | GRCg6a | 33 | g.[7093782_7093793del;7095476_7095477insCTGGGCACC] | c.[839_850del;2021_2022insCTGGGCACC] | p.[(P280_T283del;L674_L675insWAP)] | ENSGALT00000077972.2; ENSGALP00000051268.2; published as a 9-bp insertion in exon 10 shared with Dominant white and a deletion of 12 nucleotides in exon 6, eliminating four amino acids (PTVT); AY636128 | 2004 | 15579702 |
Cite this entry
Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2023). OMIA:000373-9031: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70
References
Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.
2021 | Ballantyne, M., Woodcock, M., Doddamani, D., Hu, T., Taylor, L., Hawken, R.J., McGrew, M.J. : |
Direct allele introgression into pure chicken breeds using Sire Dam Surrogate (SDS) mating. Nat Commun 12:659, 2021. Pubmed reference: 33510156. DOI: 10.1038/s41467-020-20812-x. | |
Hua, G., Chen, J., Wang, J., Li, J., Deng, X. : | |
Genetic basis of chicken plumage color in artificial population of complex epistasis. Anim Genet 52:656-66, 2021. Pubmed reference: 34224160. DOI: 10.1111/age.13094. | |
2020 | Andersson, L., Bed’hom, B., Chuong, CM., Inaba, M.Inaba, M., Okimoto, R.Okimoto, R., Tixier-Boichard, M. : |
The genetic basis for pigmentation phenotypes in poultry In S. E. Aggrey, H. Zhou, M. Tixier-Boichard, & D. D. Rhoads (Eds.), Advances in Poultry Genetics and Genomics. Cambridge, UK: Burleigh Dodds Science Publishing. , 2020. | |
Weng, Z., Xu, Y., Li, W., Chen, J., Zhong, M., Zhong, F., Du, B., Zhang, B., Huang, X. : | |
Genomic variations and signatures of selection in Wuhua yellow chicken. PLoS One 15:e0241137, 2020. Pubmed reference: 33095808. DOI: 10.1371/journal.pone.0241137. | |
2019 | Nie, C., Ban, L., Ning, Z., Qu, L. : |
Feather colour affects the aggressive behaviour of chickens with the same genotype on the dominant white (I) locus. PLoS One 14:e0215921, 2019. Pubmed reference: 31048862. DOI: 10.1371/journal.pone.0215921. | |
2011 | Watt, B., Tenza, D., Lemmon, M.A., Kerje, S., Raposo, G., Andersson, L., Marks, M.S. : |
Mutations in or near the transmembrane domain alter PMEL amyloid formation from functional to pathogenic. PLoS Genet 7:e1002286, 2011. Pubmed reference: 21949659. DOI: 10.1371/journal.pgen.1002286. | |
2010 | Karlsson, A.C., Kerje, S., Andersson, L., Jensen, P. : |
Genotype at the PMEL17 locus affects social and explorative behaviour in chickens. Br Poult Sci 51:170-7, 2010. Pubmed reference: 20461577. DOI: 10.1080/00071661003745802. | |
Liu, WB., Chen, SR., Zheng, JX., Xu, GY., Li, JY., Qu, LJ., Yang, N. : | |
[Detection of chicken dominant white gene PMEL17 mutation site by a pooling method] Yi Chuan 32:148-52, 2010. Pubmed reference: 20176559. | |
2009 | Karlsson, A.C., Kerje, S., Hallböök, F., Jensen, P. : |
The dominant white mutation in the PMEL17 gene does not cause visual impairment in chickens. Vet Ophthalmol 12:292-8, 2009. Pubmed reference: 19751488. DOI: 10.1111/j.1463-5224.2009.00714.x. | |
Kuliawat, R., Santambrogio, L. : | |
A mutation within the transmembrane domain of melanosomal protein Silver (Pmel17) changes lumenal fragment interactions. Eur J Cell Biol 88:653-67, 2009. Pubmed reference: 19679373. DOI: 10.1016/j.ejcb.2009.07.001. | |
2007 | Choi, J.W., Lee, E.Y., Shin, J.H., Zheng, Y., Cho, B.W., Kim, J.K., Kim, H., Han, J.Y. : |
Identification of breed-specific DNA polymorphisms for a simple and unambiguous screening system in germline chimeric chickens. J Exp Zool A Ecol Genet Physiol 307:241-8, 2007. Pubmed reference: 17436332. DOI: 10.1002/jez.373. | |
Nätt, D., Kerje, S., Andersson, L., Jensen, P. : | |
Plumage color and feather pecking--behavioral differences associated with PMEL17 genotypes in chicken (Gallus gallus). Behav Genet 37:399-407, 2007. Pubmed reference: 17106652. DOI: 10.1007/s10519-006-9125-0. | |
2004 | Kerje, S., Sharma, P., Gunnarsson, U., Kim, H., Bagchi, S., Fredriksson, R., Schütz, K., Jensen, P., von Heijne, G., Okimoto, R., Andersson, L. : |
The Dominant white, Dun and Smoky color variants in chicken are associated with insertion/deletion polymorphisms in the PMEL17 gene. Genetics 168:1507-18, 2004. Pubmed reference: 15579702. DOI: 10.1534/genetics.104.027995. | |
1997 | Ruyterspira, C.P., Gu, Z.L., Vanderpoel, J.J., Groenen, M.A.M. : |
Bulked segregant analysis using microsatellites - mapping of the dominant white locus in the chicken Poultry Science 76:386-391, 1997. Pubmed reference: 9057223. | |
1993 | Shoffner, R.N., Otis, J.S., Garwood, V.A. : |
Association of dominant marker traits and metric traits in chickens. Poult Sci 72:1405-10, 1993. Pubmed reference: 8378215. DOI: 10.3382/ps.0721405. | |
1987 | Ziehl, M.A., Hollander, W.F. : |
DUN, a new plumage-color mutant at the I-locus in the fowl (Gallus gallus). Iowa State J. Res. 62:337–342, 1987. | |
1962 | Blackwood, C.A., Bohren, B.B., McKean, H.E. : |
A mutation at the I locus in an inbred line of White Leghorns and its effect on growth rate Poultry Science 41:487-493, 1962. DOI: 10.3382/ps.0410488. | |
1949 | Warren, DC. : |
Linkage relations of autosomal factors in the fowl. Genetics 34:333-50, 1949. Pubmed reference: 17247319. DOI: 10.1093/genetics/34.3.333. | |
1938 | Fisher, R.A. : |
Dominance in poultry - Feathered feet, rose comb, internal pigment and pile. Proceedings of the Royal Society, Series B: Biological Sciences 125:25-48, 1938. | |
Warren, D.C. : | |
Mapping the genes of the fowl (abstract) Genetics 23:174 only, 1938. DOI: 10.1093/genetics/23.1.139. | |
1936 | Warren, D.C., Hutt, F.B. : |
Linkage relations of Crest, Dominant White and Frizzling in the fowl American Naturalist 70:379-394, 1936. DOI: 10.1086/280676. | |
1933 | Hutt, F.B. : |
Genetics of the fowl. II. a four-gene autosomal linkage group. Genetics 18:82-94, 1933. Pubmed reference: 17246679. DOI: 10.1093/genetics/18.1.82. | |
Warren, D.C. : | |
Nine independently inherited autosomal factors in the domestic fowl. Genetics 18:68-81, 1933. Pubmed reference: 17246678. DOI: 10.1093/genetics/18.1.68. | |
1917 | Goodale, H.D. : |
Crossing-over in the sex chromosome of the male fowl. Science 46:213 only, 1917. Pubmed reference: 17782267. DOI: 10.1126/science.46.1183.213. | |
1905 | Hurst, C.C. : |
Experiments with poultry. Reports to the Evolution Committee of the Royal Society 2:131-154, 1905. | |
1902 | Bateson, W., Saunders, E.R. : |
Experimental studies in the physiology of heredity. Part II. Poultry Reports to the Evolution Committee of the Royal Society 1:87-124, 1902. |
Edit History
- Created by Frank Nicholas on 01 Dec 2009
- Changed by Frank Nicholas on 10 Oct 2011
- Changed by Frank Nicholas on 09 Dec 2011
- Changed by Frank Nicholas on 05 Jul 2012
- Changed by Frank Nicholas on 17 Oct 2012
- Changed by Imke Tammen2 on 18 Sep 2021
- Changed by Frank Nicholas on 23 Feb 2022
- Changed by Imke Tammen2 on 10 Nov 2023