OMIA 001322-93934 : Feather colour, roux in Coturnix japonica

Possibly relevant human trait(s) and/or gene(s)s (MIM numbers): 115501 (gene) , 612271 (trait)

Mendelian trait/disorder: yes

Mode of inheritance: Sex-linked

Considered a defect: no

Key variant known: yes

Year key variant first reported: 2007

Species-specific symbol: r

Molecular basis: Nadeau et al. (2007) showed that this plumage mutant corresponds to a SNP (giving rise to Phe282Ser) in the gene for TYRP1 - orthologous to the classic brown coat-colour locus in mammals.

Associated gene:

Symbol Description Species Chr Location OMIA gene details page Other Links
TYRP1 tyrosinase-related protein 1 Coturnix japonica Z NC_029547.1 (27668114..27687084) TYRP1 Homologene, Ensembl, NCBI gene

Variants

By default, variants are sorted chronologically by year of publication, to provide a historical perspective. Readers can re-sort on any column by clicking on the column header. Click it again to sort in a descending order. To create a multiple-field sort, hold down Shift while clicking on the second, third etc relevant column headers.

WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.

Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.

OMIA Variant ID Breed(s) Variant Phenotype Gene Allele Type of Variant Source of Genetic Variant Reference Sequence Chr. g. or m. c. or n. p. Verbal Description EVA ID Inferred EVA rsID Year Published PubMed ID(s) Acknowledgements
258 Feather colour, roux TYRP1 missense Naturally occurring variant c.845T>C p.(F282S) 2007 18028514

References


Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.
2009 Minvielle, F., Cecchi, T., Passamonti, P., Gourichon, D., Renieri, C. :
Plumage colour mutations and melanins in the feathers of the Japanese quail: a first comparison. Anim Genet 40:971-4, 2009. Pubmed reference: 19496774. DOI: 10.1111/j.1365-2052.2009.01929.x.
2007 Nadeau, NJ., Mundy, NI., Gourichon, D., Minvielle, F. :
Association of a single-nucleotide substitution in TYRP1 with roux in Japanese quail (Coturnix japonica). Anim Genet 38:609-13, 2007. Pubmed reference: 18028514. DOI: 10.1111/j.1365-2052.2007.01667.x.
2003 Minvielle, F., Gourichon, D., Monvoisin, JL. :
Effects of two-locus combinations, using the roux, lavender, and beige mutations, on plumage color of Japanese quail. J Hered 94:517-22, 2003. Pubmed reference: 14691319.
2001 Minvielle, F., Ito, S., Inoue-Murayama, M., Mizutani, M., Wakasugi, N. :
Genetic analyses of plumage color mutations on the Z chromosome of Japanese quail. J Hered 91:499-501, 2001. Pubmed reference: 11218091.
2000 Minvielle, F., Gandemer, G., Maeda, Y., Leborgne, C., Hirigoyen, E., Boulay, M. :
Carcase characteristics of a heavy Japanese quail line under introgression with the roux gene British Poultry Science 41:41-45, 2000. Pubmed reference: 10821521. DOI: 10.1080/00071660086385.
1999 Minvielle, F., Hirigoyen, E., Boulay, M. :
Associated effects of the roux plumage color mutation on growth, carcass traits, egg production, and reproduction of Japanese quail Poultry Science 78:1479-1484, 1999. Pubmed reference: 10560817.

Edit History


  • Created by Frank Nicholas on 24 Jan 2008
  • Changed by Frank Nicholas on 08 Sep 2011
  • Changed by Frank Nicholas on 12 Oct 2011
  • Changed by Frank Nicholas on 09 Dec 2011
  • Changed by Frank Nicholas on 21 Mar 2012