OMIA:001461-9913 : Gangliosidosis, GM2, type I (B variant) in Bos taurus (taurine cattle)

In other species: American flamingo , dog , pig , muntjak , sheep , rabbit

Categories: Lysosomal storage disease , Nervous system phene

Links to possible relevant human trait(s) and/or gene(s) in OMIM: 272800 (trait) , 606869 (gene)

Single-gene trait/disorder: yes

Mode of inheritance: Autosomal recessive

Disease-related: yes

Key variant known: yes

Year key variant first reported: 2025

Cross-species summary: Tay-Sachs disease

Molecular basis: Eager et al. (2025): "Whole-genome sequencing of an affected calf identified a homozygous frameshift variant in the HEXA gene (NC_037337.1:g.19269480_19269481delinsGGAGT, NM_001075164.2: c.(834_835delinsACTCC)), absent from 18 control genomes and 1842 individuals in the 1000 Bull Genomes Project. The variant was confirmed in homozygous form in all four affected animals by Sanger sequencing and meets multiple criteria for pathogenicity."

Clinical features: Eager et al. (2025) "investigated a herd of Angus cattle with progressive neurological signs, including blindness, ataxia and lethargy."

Pathology: Eager et al. (2025):  "Histopathology revealed widespread neuronal vacuolation, and electron microscopy identified laminated cytoplasmic bodies consistent with ganglioside accumulation."

Breed: Angus (Cattle) (VBO_0000104).
Breeds in which the phene or likely causal variants have been documented. If a likely causal variant has been documented, see variant-specific breed information in the variant table. (Breed information may be incomplete).

Associated gene:

Symbol Description Species Chr Location OMIA gene details page Other Links
HEXA hexosaminidase subunit alpha Bos taurus 10 NC_037337.1 (19296240..19262091) HEXA Ensembl, NCBI gene

Variants

By default, variants are sorted chronologically by year of publication, to provide a historical perspective. Readers can re-sort on any column by clicking on the column header. Click it again to sort in a descending order. To create a multiple-field sort, hold down Shift while clicking on the second, third etc relevant column headers.

WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.

Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.

OMIA Variant ID Breed(s) Variant Phenotype Gene Allele Variant Type Variant Effect Source of Genetic Variant Pathogenicity Classification* Reference Sequence Chr. g. or m. c. or n. p. Verbal Description EVA ID Year Published PubMed ID(s) Acknowledgements
1825 Angus (Cattle) Gangliosidosis, GM2 HEXA delins, small (<=20) nonsense (stop-gain) Naturally occurring variant Not currently evaluated ARS-UCD2.0 10 NC_037337.1:g.19269480_19269481delinsGGAGT NM_001075164.2: c.834_835delinsACTCC) NP_001068632.1:p.(Y278*) 2025 41290211

* Variant pathogenicity for single gene diseases as evaluated by an expert panel of the International Society of Animal Genetics (ISAG) Animal Genetic Testing Standardization Standing Committee

Clinical synopsis/links to phenotypes

Variant Phenotype(s) References (Pubmed ID)
1825 MP:0001393: ataxia
MP:0002001: blindness
MP:0005202: lethargy
MP:0011975: neuronal cytoplasmic inclusions
MP:0002083: premature death
HP:0002344: Progressive neurologic deterioration
HP:0002317: Unsteady gait
MP:0001263: weight loss
41290211

Contact us

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Cite this entry

Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2025). OMIA:001461-9913: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70

Reference

2025 Eager, K.L.M., Willet, C.E., Davis, J., Forshaw, D., Last, R., Pincowski, P., Tammen, I., O'Rourke, B.A. :
A novel HEXA frameshift mutation identified in Angus cattle with GM2 gangliosidosis. Anim Genet 56:e70059, 2025. Pubmed reference: 41290211. DOI: 10.1111/age.70059.

Edit History


  • Created by Imke Tammen2 on 19 Jun 2024
  • Changed by Imke Tammen2 on 02 Sep 2024
  • Changed by Imke Tammen2 on 27 Nov 2025