OMIA:001461-9913 : Gangliosidosis, GM2, type I (B variant) in Bos taurus (taurine cattle) |
In other species: American flamingo , dog , pig , muntjak , sheep , rabbit
Categories: Lysosomal storage disease , Nervous system phene
Links to possible relevant human trait(s) and/or gene(s) in OMIM: 272800 (trait) , 606869 (gene)
Single-gene trait/disorder: yes
Mode of inheritance: Autosomal recessive
Disease-related: yes
Key variant known: yes
Year key variant first reported: 2025
Cross-species summary: Tay-Sachs disease
Molecular basis: Eager et al. (2025): "Whole-genome sequencing of an affected calf identified a homozygous frameshift variant in the HEXA gene (NC_037337.1:g.19269480_19269481delinsGGAGT, NM_001075164.2: c.(834_835delinsACTCC)), absent from 18 control genomes and 1842 individuals in the 1000 Bull Genomes Project. The variant was confirmed in homozygous form in all four affected animals by Sanger sequencing and meets multiple criteria for pathogenicity."
Clinical features: Eager et al. (2025) "investigated a herd of Angus cattle with progressive neurological signs, including blindness, ataxia and lethargy."
Pathology: Eager et al. (2025): "Histopathology revealed widespread neuronal vacuolation, and electron microscopy identified laminated cytoplasmic bodies consistent with ganglioside accumulation."
Breed:
Angus (Cattle) (VBO_0000104).
Breeds in which the phene or likely causal variants have been documented. If a likely causal variant has been documented, see variant-specific breed information in the variant table. (Breed information may be incomplete).
Associated gene:
| Symbol | Description | Species | Chr | Location | OMIA gene details page | Other Links |
|---|---|---|---|---|---|---|
| HEXA | hexosaminidase subunit alpha | Bos taurus | 10 | NC_037337.1 (19296240..19262091) | HEXA | Ensembl, NCBI gene |
Variants
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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
| OMIA Variant ID | Breed(s) | Variant Phenotype | Gene | Allele | Variant Type | Variant Effect | Source of Genetic Variant | Pathogenicity Classification* | Reference Sequence | Chr. | g. or m. | c. or n. | p. | Verbal Description | EVA ID | Year Published | PubMed ID(s) | Acknowledgements |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1825 | Angus (Cattle) | Gangliosidosis, GM2 | HEXA | delins, small (<=20) | nonsense (stop-gain) | Naturally occurring variant | Not currently evaluated | ARS-UCD2.0 | 10 | NC_037337.1:g.19269480_19269481delinsGGAGT | NM_001075164.2: c.834_835delinsACTCC) | NP_001068632.1:p.(Y278*) | 2025 | 41290211 |
* Variant pathogenicity for single gene diseases as evaluated by an expert panel of the International Society of Animal Genetics (ISAG) Animal Genetic Testing Standardization Standing Committee
Clinical synopsis/links to phenotypes
Contact us
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Cite this entry
Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2025). OMIA:001461-9913: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70
Reference
| 2025 | Eager, K.L.M., Willet, C.E., Davis, J., Forshaw, D., Last, R., Pincowski, P., Tammen, I., O'Rourke, B.A. : |
| A novel HEXA frameshift mutation identified in Angus cattle with GM2 gangliosidosis. Anim Genet 56:e70059, 2025. Pubmed reference: 41290211. DOI: 10.1111/age.70059. |
Edit History
- Created by Imke Tammen2 on 19 Jun 2024
- Changed by Imke Tammen2 on 02 Sep 2024
- Changed by Imke Tammen2 on 27 Nov 2025