OMIA 002486-9031 : Frizzle, KRT75L4-related in Gallus gallus |
Chen et al. (2021) identified the same mutation in a different breed: "frizzle feather characteristics were observed in a local breed called Xiushui Yellow Chicken in Jiangxi, China. ... Using a comparative genome strategy and genome-wide association study, a missense mutation ... and a 15-bp deletion ... in KRT75L4 were identified ... . Based on genotyping performed in a large Xiushui Yellow Chicken population, the g.5285437-5285451delGATGCCGGCAGGACG mutation in KRT75L4 was confirmed as the putative causative mutation of frizzle feather."
Breeds: Kirin, Xiushui Yellow. Associated gene:Symbol | Description | Species | Chr | Location | OMIA gene details page | Other Links |
---|---|---|---|---|---|---|
KRT75L4 | keratin, type II cytoskeletal 75-like 4 | Gallus gallus | 34 | NC_052565.1 (2014937..2022171) | KRT75L4 | Homologene, Ensembl, NCBI gene |
Variants
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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
OMIA Variant ID | Breed(s) | Variant Phenotype | Gene | Allele | Type of Variant | Source of Genetic Variant | Reference Sequence | Chr. | g. or m. | c. or n. | p. | Verbal Description | EVA ID | Inferred EVA rsID | Year Published | PubMed ID(s) | Acknowledgements |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1398 | Kirin Xiushui Yellow | Frizzle | KRT75L4 | deletion, small (<=20) | Naturally occurring variant | GRCg6a | 33 | g.5285437-5285451del | g.5285437-5285451delGATGCCGGCAGGACG | 2018 | 30572816 |
References
Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.
2022 | Chen, B., Xi, S., El-Senousey, H.A.K., Zhou, M., Cheng, D., Chen, K., Wan, L., Xiong, T., Liao, M., Liu, S., Mao, H. : | |
Deletion in KRT75L4 linked to frizzle feather in Xiushui Yellow chickens. Anim Genet 53:101-107, 2022. Pubmed reference: 34904261. DOI: 10.1111/age.13158. | ||
2018 | Dong, J., He, C., Wang, Z., Li, Y., Li, S., Tao, L., Chen, J., Li, D., Yang, F., Li, N., Zhang, Q., Zhang, L., Wang, G., Akinyemi, F., Meng, H., Du, B. : | |
A novel deletion in KRT75L4 mediates the frizzle trait in a Chinese indigenous chicken. Genet Sel Evol 50:68, 2018. Pubmed reference: 30572816. DOI: 10.1186/s12711-018-0441-7. | ||
Guo, X., Li, Y.Q., Wang, M.S., Wang, Z.B., Zhang, Q., Shao, Y., Jiang, R.S., Wang, S., Ma, C.D., Murphy, R.W., Wang, G.Q., Dong, J., Zhang, L., Wu, D.D., Du, B.W., Peng, M.S., Zhang, Y.P. : | ||
A parallel mechanism underlying frizzle in domestic chickens. J Mol Cell Biol 10:589-591, 2018. Pubmed reference: 29868726. DOI: 10.1093/jmcb/mjy037. |
Edit History
- Created by Imke Tammen2 on 22 Dec 2021
- Changed by Imke Tammen2 on 22 Dec 2021