OMIA:002525-9685 : Polycystic kidney disease-2 in Felis catus (domestic cat) |
In other species: pig
Categories: Renal / urinary system phene
Links to possible relevant human trait(s) and/or gene(s) in OMIM: 173910 (gene) , 613095 (trait)
Links to relevant human diseases in MONDO:
Mendelian trait/disorder: yes
Mode of inheritance: Autosomal dominant
Disease-related: yes
Key variant known: yes
Year key variant first reported: 2021
Molecular basis: Rodney et al. (2021): "A novel frameshift mutation in polycystin 2 (PKD2), ... was predicted to disrupt protein function in a Siberian cat shown by ultrasound to have PKD. This mutation, a single-base deletion, causes a truncated protein (p.Lys737Asnfs*2). This variant was heterozygous in the affected cat and unique to the exome data and was not identified in the 195-cat cohort of the 99 Lives variant dataset ... . This variant was also identified in both grandparents on the dam’s side of the pedigree, although kidney ultrasound was not available. However, analysis of other Siberian cats with PKD diagnosed by ultrasound failed to identify the c.2211delG variant in PKD2, suggesting that this could be a private variant and that other disease-causing PKD variants are yet to be discovered in this breed."
Breed:
Siberian (Cat) (VBO_0100223).
Breeds in which the phene has been documented. (If a likely causal variant has been documented for the phene, see the variant table breeds in which the variant has been reported).
Associated gene:
| Symbol | Description | Species | Chr | Location | OMIA gene details page | Other Links |
|---|---|---|---|---|---|---|
| PKD2 | polycystic kidney disease 2 (autosomal dominant) | Felis catus | B1 | NC_058371.1 (132565063..132514456) | PKD2 | Homologene, Ensembl , NCBI gene |
Variants
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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
| OMIA Variant ID | Breed(s) | Variant Phenotype | Gene | Allele | Type of Variant | Source of Genetic Variant | Reference Sequence | Chr. | g. or m. | c. or n. | p. | Verbal Description | EVA ID | Year Published | PubMed ID(s) | Acknowledgements |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1424 | Siberian (Cat) | Polycystic kidney disease 2 | PKD2 | deletion, small (<=20) | Naturally occurring variant | Felis_catus_9.0 | B1 | g.134992553del | c.2211del | (p.K737Nfs*2) | XM_011281830.3; XP_011280132.2; published as c.2211delG | 2021 | 33785770 |
Cite this entry
Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2023). OMIA:002525-9685: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70
References
Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.
| 2021 | Rodney, A.R., Buckley, R.M., Fulton, R.S., Fronick, C., Richmond, T., Helps, C.R., Pantke, P., Trent, D.J., Vernau, K.M., Munday, J.S., Lewin, A.C., Middleton, R., Lyons, L.A., Warren, W.C. : |
| A domestic cat whole exome sequencing resource for trait discovery. Sci Rep 11:7159, 2021. Pubmed reference: 33785770. DOI: 10.1038/s41598-021-86200-7. | |
| Schirrer, L., Marín-García, P.J., Llobat, L. : | |
| Feline polycystic kidney disease: An update. Vet Sci 8:269, 2021. Pubmed reference: 34822642. DOI: 10.3390/vetsci8110269. |
Edit History
- Created by Imke Tammen2 on 03 Feb 2022
- Changed by Imke Tammen2 on 13 Jun 2023