OMIA:002926-9615 : Retinal atrophy, progressive, GTPBP2-related in Canis lupus familiaris (dog)

Categories: Vision / eye phene

Links to possible relevant human trait(s) and/or gene(s) in OMIM: 617988 (trait) , 607434 (gene)

Single-gene trait/disorder: yes

Mode of inheritance: Autosomal recessive

Disease-related: yes

Key variant known: yes

Year key variant first reported: 2025

Molecular basis: Murgiano et al. (2025): "Homozygosity mapping and whole-genome sequencing [of 2 affected Labrador retrievers and their unaffected parents] detected a homozygous 3-bp deletion in the coding region of GTPBP2, located in CFA12 (NC_049233.1:12,264,348_12,264,350del, c.1606_1608del, p.Ala536del)."

Clinical features: Murgiano et al. (2025) report 3 affected Labrador retrievers from the same litter with progressive retinal atrophy with onset of clinical signs between 7 month and 1.5 years. "Two of the dogs developed Addison’s disease .... ; one of these later developed diabetes mellitus and died from a hypoglycemic event."

Breed: Labrador Retriever (Dog) (VBO_0200800).
Breeds in which the phene or likely causal variants have been documented. If a likely causal variant has been documented, see variant-specific breed information in the variant table. (Breed information may be incomplete).

Associated gene:

Symbol Description Species Chr Location OMIA gene details page Other Links
GTPBP2 GTP binding protein 2 Canis lupus familiaris 12 NC_051816.1 (12564921..12520899) GTPBP2 Ensembl, NCBI gene

Variants

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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.

Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.

OMIA Variant ID Breed(s) Variant Phenotype Gene Allele Variant Type Variant Effect Source of Genetic Variant Pathogenicity Classification* Reference Sequence Chr. g. or m. c. or n. p. Verbal Description EVA ID Year Published PubMed ID(s) Acknowledgements
1774 Labrador Retriever (Dog) Retinal atrophy, progressive, GTPBP2-related GTPBP2 deletion, small (<=20) Naturally occurring variant Not currently evaluated UU_Cfam_GSD_1.0 12 NC_049233.1:g.12264348_12264350del XM_038554178.1:c.1607_1609del XP_038410105.1:p.(A536del) Published as c.1606_1608del, c. coordinates updated to NCBI transcript 2025 39971978

* Variant pathogenicity for single gene diseases as evaluated by an expert panel of the International Society of Animal Genetics (ISAG) Animal Genetic Testing Standardization Standing Committee

Clinical synopsis/links to phenotypes

Variant Phenotype(s) References (Pubmed ID)
1774 MP:0002090: abnormal vision
UPHENO:0074003: retina degeneration
39971978

Contact us

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Cite this entry

Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2025). OMIA:002926-9615: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70

Reference

2025 Murgiano, L., Niggel, J.K., Akyürek, E.E., Sacchetto, R., Aguirre, G.D. :
GTPBP2 in-frame deletion in canine model with non-syndromic progressive retinal atrophy. Sci Rep 15:6079, 2025. Pubmed reference: 39971978. DOI: 10.1038/s41598-025-89446-7.

Edit History


  • Created by Imke Tammen2 on 21 Feb 2025
  • Changed by Imke Tammen2 on 21 Feb 2025