OMIA:003031-9685 : Deafness, LHFPL5-related in Felis catus (domestic cat) |
Categories: Hearing / vestibular / ear phene
Links to possible relevant human trait(s) and/or gene(s) in OMIM: 609427 (gene) , 610265 (trait)
Single-gene trait/disorder: yes
Mode of inheritance: Probably autosomal recessive
Disease-related: yes
Key variant known: yes
Year key variant first reported: 2025
Molecular basis: Perret et al (2025): "Whole‐genome sequencing of the affected cat [with deafness and vestibular signs] and comparison with 106 control genomes identified a private homozygous splice site variant in the LHFPL5 gene, XM_003986102.4:c.413‐2A>G [omia.variant:1862]. ... The LHFPL5 protein is essential for hearing and balance, as it anchors the tip link of inner ear hair cells to the mechano‐electrical transducer channel. The identified splice site variant in the investigated cat is likely to result in loss of functional LHFPL5 and represents a candidate causal variant for the observed auditory and vestibular dysfunction in the affected cat."
Clinical features: Perret et al (2025): "A 30‐month‐old cat was presented with a chronic history of deafness, vestibular signs, intermittent aggressive behavior, and vocalizations. The owners reported that the cat had never shown any normal response to noise or calling. ... Neurological examination identified loud vocalizations while pacing into the room, which were subjectively judged to be related to hearing impairment rather than pain. A bilateral head swaying movement was also observed together with a low head and body posture close to the ground ... . An ophthalmological examination was unremarkable."
Associated gene:
| Symbol | Description | Species | Chr | Location | OMIA gene details page | Other Links |
|---|---|---|---|---|---|---|
| LHFPL5 | LHFPL tetraspan subfamily member 5 | Felis catus | B2 | NC_058372.1 (34324550..34350746) | LHFPL5 | Ensembl, NCBI gene |
Variants
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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
| OMIA Variant ID | Breed(s) | Variant Phenotype | Gene | Allele | Variant Type | Variant Effect | Source of Genetic Variant | Pathogenicity Classification* | Reference Sequence | Chr. | g. or m. | c. or n. | p. | Verbal Description | EVA ID | Year Published | PubMed ID(s) | Acknowledgements |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1862 | Deafness, LHFPL5-realated | LHFPL5 | substitution | splicing | Naturally occurring variant | Not currently evaluated | F.catus_Fca126_mat1.0 | B2 | NC_058372.1:g.34339237A>G | XM_003986102.4:c.413‐2A>G | 2025 | 41400044 |
* Variant pathogenicity for single gene diseases as evaluated by an expert panel of the International Society of Animal Genetics (ISAG) Animal Genetic Testing Standardization Standing Committee
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Cite this entry
Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2026). OMIA:003031-9685: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70
Reference
| 2025 | Perret, A.C., Guevar, J., Jagannathan, V., Leeb, T. : |
| LHFPL5 splice site variant in a cat with deafness and vestibular dysfunction. Anim Genet 56:e70062, 2025. Pubmed reference: 41400044. DOI: 10.1002/age.70062. |
Edit History
- Created by Imke Tammen2 on 05 Jan 2026
- Changed by Imke Tammen2 on 05 Jan 2026