OMIA 000213-89462 : Coat colour, white in Bubalus bubalis
|Symbol||Description||Species||Chr||Location||OMIA gene details page||Other Links|
|ASIP||agouti signaling protein||Bubalus bubalis||14||NC_059170.1 (20091365..19998890)||ASIP||Homologene, Ensembl, NCBI gene|
By default, variants are sorted chronologically by year of publication, to provide a historical perspective. Readers can re-sort on any column by clicking on the column header. Click it again to sort in a descending order. To create a multiple-field sort, hold down Shift while clicking on the second, third etc relevant column headers.
WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
|OMIA Variant ID||Breed(s)||Variant Phenotype||Gene||Allele||Type of Variant||Source of Genetic Variant||Reference Sequence||Chr.||g. or m.||c. or n.||p.||Verbal Description||EVA ID||Inferred EVA rsID||Year Published||PubMed ID(s)||Acknowledgements|
|1270||White||ASIP||insertion, gross (>20)||Naturally occurring variant||UOA_WB_1||14||"2,809-bp-long LINE-1 insertion in the ASIP (agouti signaling protein) gene" (Liang et al. (2020)||2021||33212507|
Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.
|2021||Liang, D., Zhao, P., Si, J., Fang, L., Pairo-Castineira, E., Hu, X., Xu, Q., Hou, Y., Gong, Y., Liang, Z., Tian, B., Mao, H., Yindee, M., Faruque, M.O., Kongvongxay, S., Khamphoumee, S., Liu, G.E., Wu, D.D., Barker, J.S.F., Han, J., Zhang, Y. :|
|Genomic analysis revealed a convergent evolution of LINE-1 in coat color: A case study in water buffaloes (Bubalus bubalis). Mol Biol Evol 38:1122-1136, 2021. Pubmed reference: 33212507. DOI: 10.1093/molbev/msaa279.|
|1962||Rife, D.C. :|
|Color and horn variations in water buffalo. The inheritance of coat color, eye color and shape of horns. J Hered 53:239-46, 1962. Pubmed reference: 13973831.|
|1959||Rife, D.C., Buranamanus, P. :|
|Inheritance of white coat color in the water buffalo of Thailand Journal of Heredity 50:269-270, 1959. DOI: 10.1093/oxfordjournals.jhered.a106923.|
- Created by Frank Nicholas on 06 Sep 2005
- Changed by Frank Nicholas on 20 Aug 2020
- Changed by Frank Nicholas on 26 Nov 2020