OMIA:001737-89462 : Coat colour, white spotting, KIT-related in Bubalus bubalis (water buffalo)

In other species: dog , domestic cat , ass (donkey) , Arabian camel , taurine cattle , goat

Categories: Pigmentation phene

Links to possible relevant human trait(s) and/or gene(s) in OMIM: 172800 (trait) , 164920 (gene)

Mendelian trait/disorder: yes

Disease-related: no

Key variant known: yes

Year key variant first reported: 2024

Cross-species summary: Variable degree of white spotting ranging from tiny white spots up to completely white animals. The absence of pigment is caused by the absence of skin melanocytes ("leucism, leucistic"), not by failure in the biochemical reactions required for pigment synthesis.

Molecular basis: Dai et al. (2024) "successfully validated these ... previously identified mutations in MITF [Yusnizar et al., 2015, see OMIA:000214-89462  for details] and detected the KIT gene as another candidate responsible for the manifestation of the white spotting in swamp buffaloes [omia.variant:1725]. ... These mutations jointly explained 95% of the white spotting in swamp buffaloes .... [The authors]  also found evidence for other candidate genes relevant to the white spotting."
Gurao et al. (2024) report an exon 2 deletion in KIT after sequencing mRNA from "skin tissue of Nili Ravi riverine buffalo
with excessive white spotting." The authors concluded that variant was associated with white spotting in htis breed. The underlying change in genomic DNA was not reported.

Breed: Nili-Ravi (Buffalo) (VBO_0000078).
Breeds in which the phene has been documented. (If a likely causal variant has been documented for the phene, see the variant table breeds in which the variant has been reported).

Associated gene:

Symbol Description Species Chr Location OMIA gene details page Other Links
KIT KIT proto-oncogene, receptor tyrosine kinase Bubalus bubalis 7 NC_059163.1 (47225867..47139439) KIT Homologene, Ensembl , NCBI gene

Variants

By default, variants are sorted chronologically by year of publication, to provide a historical perspective. Readers can re-sort on any column by clicking on the column header. Click it again to sort in a descending order. To create a multiple-field sort, hold down Shift while clicking on the second, third etc relevant column headers.

WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.

Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.

OMIA Variant ID Breed(s) Variant Phenotype Gene Allele Type of Variant Source of Genetic Variant Reference Sequence Chr. g. or m. c. or n. p. Verbal Description EVA ID Year Published PubMed ID(s) Acknowledgements
1725 Coat colour, white spotting, KIT-related KIT nonsense (stop-gain) Naturally occurring variant UOA_WB_1 7 NC_037551.1:47207784A>T NM_001290952.1:c.2016T>A NP_001277881.1:p.(Y672*) 2024 39048931

Cite this entry

Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2024). OMIA:001737-89462: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70

References

Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.

2024 Dai, D., Sari, E.M., Si, J., Ashari, H., Dagong, M.I.A., Pauciullo, A., Lenstra, J.A., Han, J., Zhang, Y. :
Genomic analysis reveals the association of KIT and MITF variants with the white spotting in swamp buffaloes. BMC Genomics 25:713, 2024. Pubmed reference: 39048931. DOI: 10.1186/s12864-024-10634-2.
Gurao, A., Vasisth, R., Kumari, N., Chitkara, M., Singh, R., Mukesh, M., Vohra, V., Kumar, S., Dige, M.S., Kataria, R.S. :
Identification of KIT gene transcript variants in white spotted river buffalo (Bubalus bubalis). Anim Genet 55:918-920, 2024. Pubmed reference: 39390777. DOI: 10.1111/age.13484.

Edit History


  • Created by Imke Tammen2 on 24 Aug 2024
  • Changed by Imke Tammen2 on 24 Aug 2024
  • Changed by Imke Tammen2 on 06 Sep 2024
  • Changed by Imke Tammen2 on 13 Oct 2024