OMIA 001787-9615 : Squamous cell carcinoma of the digit in Canis lupus familiaris

Mendelian trait/disorder: no

Mode of inheritance: Multifactorial

Considered a defect: yes

Key variant known: yes

Year key variant first reported: 2013

Species-specific symbol: SCCD

Mapping: A GWAS with the Affymetrix v2 Canine SNP Chip conducted by Karyadi et al. (2013) on 31 affected (dark-coloured) Standard Poodles and 34 unrelated black Standard Poodles, followed by fine-mapping, highlighted a 28.3kb region on chromosome CFA15, in which KITLG resides.

Molecular basis: Karyadi et al. (2013) identified a copy number variant (CNV) of KITLG that is very strongly associated with SCCD in (dark-coloured) Standard Poodles. Interestingly, light-coloured Standard Poodles have the same CNV at the same frequency, but are not affected, which suggests an interaction between KITLG and a coat-colour gene (Karyadi et al., 2013). A GWAS with the Illumina CanineHD BeadChip on 24 dark-coloured and 24 light-coloured Standard Poodles implicated variation at the coat-colour gene MC1R as the only difference between the two types of Standard Poodles.

Clinical features: As summarised by Karyadi et al. (2013), SCCD is a "locally aggressive cancer that causes lytic bone lesions, sometimes with multiple toe recurrence".

Prevalence: As mentioned above, only dark-coloured Standard Poodles are susceptible; light-coloured dogs of the same breed are rarely affected.

Breed: Standard Poodle.

Associated gene:

Symbol Description Species Chr Location OMIA gene details page Other Links
KITLG KIT ligand Canis lupus familiaris 15 NC_006597.3 (29671985..29591068) KITLG Homologene, Ensembl, NCBI gene

Variants

By default, variants are sorted chronologically by year of publication, to provide a historical perspective. Readers can re-sort on any column by clicking on the column header. Click it again to sort in a descending order. To create a multiple-field sort, hold down Shift while clicking on the second, third etc relevant column headers.

WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.

Breed(s) Variant Phenotype Gene Allele Type of Variant Reference Sequence Chr. g. or m. c. or n. p. Verbal Description EVA ID Year Published PubMed ID(s) Acknowledgements
Standard Poodle Squamous cell carcinoma of the digit KITLG repeat variation a copy number variant (CNV) of KITLG 2013 23555311

References


Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.
2016 Marsden, C.D., Ortega-Del Vecchyo, D., O'Brien, D.P., Taylor, J.F., Ramirez, O., Vilà, C., Marques-Bonet, T., Schnabel, R.D., Wayne, R.K., Lohmueller, K.E. :
Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs. Proc Natl Acad Sci U S A 113:152-7, 2016. Pubmed reference: 26699508. DOI: 10.1073/pnas.1512501113.
2014 Davis, B.W., Ostrander, E.A. :
Domestic dogs and cancer research: a breed-based genomics approach. ILAR J 55:59-68, 2014. Pubmed reference: 24936030. DOI: 10.1093/ilar/ilu017.
2013 Karyadi, D.M., Karlins, E., Decker, B., Vonholdt, B.M., Carpintero-Ramirez, G., Parker, H.G., Wayne, R.K., Ostrander, E.A. :
A Copy Number Variant at the KITLG Locus Likely Confers Risk for Canine Squamous Cell Carcinoma of the Digit. PLoS Genet 9:e1003409, 2013. Pubmed reference: 23555311. DOI: 10.1371/journal.pgen.1003409.
2008 Goldschmidt, M., Hendrick, M. :
Tumors of the Skin and Soft Tissues. In: Tumors in Domestic Animals. Meuten DJ, editor. Ames, Iowa: Iowa State University Press :45–119, 2008.
2007 Wobeser, B.K., Kidney, B.A., Powers, B.E., Withrow, S.J., Mayer, M.N., Spinato, M.T., Allen, A.L. :
Agreement among surgical pathologists evaluating routine histologic sections of digits amputated from cats and dogs. J Vet Diagn Invest 19:439-43, 2007. Pubmed reference: 17609360.
2005 Henry, C.J., Brewer, W.G., Whitley, E.M., Tyler, J.W., Ogilvie, G.K., Norris, A., Fox, L.E., Morrison, W.B., Hammer, A., Vail, D.M., Berg, J. :
Canine digital tumors: a veterinary cooperative oncology group retrospective study of 64 dogs. J Vet Intern Med 19:720-4, 2005. Pubmed reference: 16231717.
1995 Marino, D.J., Matthiesen, D.T., Stefanacci, J.D., Moroff, S.D. :
Evaluation of dogs with digit masses: 117 cases (1981-1991). J Am Vet Med Assoc 207:726-8, 1995. Pubmed reference: 7657570.
1992 O'Brien, M.G., Berg, J., Engler, S.J. :
Treatment by digital amputation of subungual squamous cell carcinoma in dogs: 21 cases (1987-1988) J Am Vet Med Assoc 201:759-61, 1992. Pubmed reference: 1399782.
1989 Paradis, M., Scott, D.W., Breton, L. :
Squamous cell carcinoma of the nail bed in three related giant schnauzers. Vet Rec 125:322-4, 1989. Pubmed reference: 2800263.
1984 Goldschmidt, M.H. :
Basal- and squamous-cell neoplasms of dogs and cats. Am J Dermatopathol 6:199-206, 1984. Pubmed reference: 6731733.
1983 Frese, K., Frank, H., Eskens, U. :
[Squamous cell carcinoma of the toes in dogs]. Dtsch Tierarztl Wochenschr 90:359-63, 1983. Pubmed reference: 6354679.

Edit History


  • Created by Frank Nicholas on 23 Apr 2013
  • Changed by Frank Nicholas on 23 Apr 2013