OMIA 002096-9796 : Naked foal syndrome in Equus caballus
|Symbol||Description||Species||Chr||Location||OMIA gene details page||Other Links|
|ST14||suppression of tumorigenicity 14 (colon carcinoma)||Equus caballus||7||NC_009150.3 (39689396..39728855)||ST14||Homologene, Ensembl, NCBI gene|
By default, variants are sorted chronologically by year of publication, to provide a historical perspective. Readers can re-sort on any column by clicking on the column header. Click it again to sort in a descending order. To create a multiple-field sort, hold down Shift while clicking on the second, third etc relevant column headers.
WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
|OMIA Variant ID||Breed(s)||Variant Phenotype||Gene||Allele||Type of Variant||Source of Genetic Variant||Reference Sequence||Chr.||g. or m.||c. or n.||p.||Verbal Description||EVA ID||Inferred EVA rsID||Year Published||PubMed ID(s)||Acknowledgements|
|354||Akhal-Teke||Naked foal syndrome||ST14||nonsense (stop-gain)||Naturally occurring variant||EquCab3.0||7||g.39710628G>T||c.388G>T||p.(E130*)||XM_005611718.2 (c.388G>T); XP_005611775.1 (p.(E130*))||2017||28235824||(FN thanks Emily Rogers for providing the genomic location (determined using BLAT with the XM_005611718.2 sequence against Equcab 3.0) and the sequence refs for the cDNA and protein variants, working under the supervision of Professor Ernie Bailey; 24 April 2020)|
Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.
|2017||Bauer, A., Hiemesch, T., Jagannathan, V., Neuditschko, M., Bachmann, I., Rieder, S., Mikko, S., Penedo, M.C., Tarasova, N., Vitková, M., Sirtori, N., Roccabianca, P., Leeb, T., Welle, M.M. :|
|A Nonsense Variant in the ST14 Gene in Akhal-Teke Horses with Naked Foal Syndrome. G3 (Bethesda) 7:1315-1321, 2017. Pubmed reference: 28235824. DOI: 10.1534/g3.117.039511.|
|2011||Leisson, K., Alev, K., Kaasik, P., Jaakma, Ü., Seene, T. :|
|Myosin heavy chain pattern in the Akhal-Teke horses. Animal 5:658-62, 2011. Pubmed reference: 22439988. DOI: 10.1017/S1751731110002375.|
|2007||Kuznetcova, Y. :|
|Again about sphynxes. Akhal-Teke Inform. :164-165, 2007.|
|2006||Kuznetcova, Y. , Kozyreva, M., Aleksandrova, N. :|
|The Stavropol Sphynx Akhal-Teke Inform. :144-147, 2006.|
- Created by Frank Nicholas on 28 Feb 2017
- Changed by Frank Nicholas on 28 Feb 2017
- Changed by Tosso Leeb on 01 Mar 2017
- Changed by Frank Nicholas on 24 Apr 2020