OMIA 002108-9031 : Barring, autosomal in Gallus gallus |
Symbol | Description | Species | Chr | Location | OMIA gene details page | Other Links |
---|---|---|---|---|---|---|
MC1R | melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) | Gallus gallus | 11 | NC_052542.1 (18487539..18488982) | MC1R | Homologene, Ensembl, NCBI gene |
Variants
By default, variants are sorted chronologically by year of publication, to provide a historical perspective. Readers can re-sort on any column by clicking on the column header. Click it again to sort in a descending order. To create a multiple-field sort, hold down Shift while clicking on the second, third etc relevant column headers.
WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
OMIA Variant ID | Breed(s) | Variant Phenotype | Gene | Allele | Type of Variant | Source of Genetic Variant | Reference Sequence | Chr. | g. or m. | c. or n. | p. | Verbal Description | EVA ID | Inferred EVA rsID | Year Published | PubMed ID(s) | Acknowledgements |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1306 | Fayoumi | Barring, autosomal | MC1R | E*R(Fay), Pg | missense | Naturally occurring variant | GRCg6a | 11 | g.18841043T>A | c.398T>A | p.(L133Q) | rs737523889 | 2021 | 33793042 |
References
Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.
2021 | Hua, G., Chen, J., Wang, J., Li, J., Deng, X. : | |
Genetic basis of chicken plumage color in artificial population of complex epistasis. Anim Genet 52:656-66, 2021. Pubmed reference: 34224160. DOI: 10.1111/age.13094. | ||
Schwochow, D., Bornelöv, S., Jiang, T., Li, J., Gourichon, D., Bed'Hom, B., Dorshorst, B.J., Chuong, C.M., Tixier-Boichard, M., Andersson, L. : | ||
The feather pattern autosomal barring in chicken is strongly associated with segregation at the MC1R locus. Pigment Cell Melanoma Res 34:1015-1028, 2021. Pubmed reference: 33793042. DOI: 10.1111/pcmr.12975. | ||
2020 | Andersson, L., Bed’hom, B., Chuong, CM., Inaba, M.Inaba, M., Okimoto, R.Okimoto, R., Tixier-Boichard, M. : | |
The genetic basis for pigmentation phenotypes in poultry In S. E. Aggrey, H. Zhou, M. Tixier-Boichard, & D. D. Rhoads (Eds.), Advances in Poultry Genetics and Genomics. Cambridge, UK: Burleigh Dodds Science Publishing. :, 2020. | ||
2002 | Carefoot, W.C. : | |
Hen-feathering mutation HF*H may act as a eumelanising factor and modify the expression of autosomal barring British Poultry Science 43:391-394, 2002. Pubmed reference: 12195798. DOI: 10.1080/00071660120103666. | ||
1999 | Carefoot, W.C. : | |
Inheritance of the barred plumage pattern of the Silver Campine Fowl, together with its relationship to other patterned fowl British Poultry Science 40:217-220, 1999. Pubmed reference: 10465388. DOI: 10.1080/00071669987629. | ||
1990 | Smyth. JR. : | |
Genetics of plumage, skin and eye pigmentation in chickens In R. D. Crawford (Ed.), Poultry Breeding and Genetics. Amsterdam: Elsevier Science Publishers :, 1990. | ||
1985 | Carefoot, W.C. : | |
Effect of the eumelanin restrictor Db on plumage pattern phenotypes of the domestic fowl. Br Poult Sci 26:409-12, 1985. Pubmed reference: 4027744. DOI: 10.1080/00071668508416829. | ||
1933 | Hertwig, P. : | |
Geschlechtsgebundene und autosomale Koppelungen bei Huhnern [Sex-linked and autosomal couplings in chickens] Verhandlungen der Deutschen zoologischen Gesellschaft 43:112-118, 1933. |
Edit History
- Created by Frank Nicholas on 22 May 2017
- Changed by Imke Tammen2 on 14 Apr 2021