OMIA:002131-9615 : Methaemoglobinaemia, CYB5R3-related in Canis lupus familiaris (dog) |
In other species: domestic cat
Categories: Haematopoietic system phene
Links to possible relevant human trait(s) and/or gene(s) in OMIM: 250800 (trait) , 613213 (gene)
Links to relevant human diseases in MONDO:
Mendelian trait/disorder: yes
Mode of inheritance: Autosomal recessive
Disease-related: yes
Key variant known: yes
Year key variant first reported: 2017
Cross-species summary: Methemoglobinemia
Species-specific name: NADH cytochrome B5 reductase deficiency, hereditary canine methaemoglobinaemia.
Molecular basis:
Analysis of genome sequence in two comparative candidate genes in a single affected dog enabled Jaffey et al. (2017) to report that "No potentially causal sequence variants were recognized within the CYB5A genic region but, we found 2 heterozygous CYB5R3 missense mutations: [CanFam3.1] chr10:22,832,963G>A that predicted a CYB5R3:p.Gly72Ser amino acid substitution and [CanFam3.1] chr10:22,836,951A>C that predicted a CYB5R3:p.Ile190Leu amino acid substitution. . . . There is strong indirect evidence for a causal contribution from 1 of them: CYB5R3:p.Gly72Ser. Indeed, 3 on-line algorithms that estimate the functional consequences of sequence variants all predict impaired function for the Ser72 allele . . . . In addition, a heterozygous glycine-to-serine missense mutation at a homologous position in human cytochrome b5 reductase was reported to be partially responsible for the methemoglobinemia in a compound heterozygous human patient. . . . However, a single heterozygous mutation cannot by itself be responsible for an autosomal recessive disease such as cytochrome b5 reductase deficiency." In summary, Jaffey et al. (2017) have proposed that this case could be due to compound heterozygosity involving one unquestionably deleterious variant, but expression studies and population-wide associations studies have yet to be conducted. Compound heterozygosity as a cause of inherited disorders is not uncommon in humans, e.g. the OMIM entry (see above hyperlink) mentions that some cases of this disorder in humans are due to "compound heterozygous mutation[s] in the CYB5R3 gene". Shino et al. (2018) reported a likely causal variant in Pomeranians, namely c.580A>C; p.Ile194Leu. But the evidence supporting the causality of this variant is marginal, comprising an affected sire and his two affected offspring being homozygous for the C variant, with 5 unrelated normal Pomeranians and some normal Beagles being homozygous for the A variant.
Jaffey et al. (2020) investigated 30 dogs of differnt breeds with with persistent cyanosis and low CYB5R enzyme activities: "Two previously reported and two novel CYB5R3 missense variants were identified among the methemoglobinemic cohort and were predicted to impair enzyme function. Two variants were recurrent: a homozygous Ile194Leu substitution was found in Pomeranians and other small dogs, and a homozygous Arg219Pro change occurred predominately in pit bull terriers. The other two variants were Thr202Ala and Gly76Ser substitutions in single dogs."
Clinical features: Jaffey et al. (2017): "Arterial blood gas analysis with co-oximetry identified methemoglobinemia concurrent with normal arterial oxygen tension at FIO2 = 0.21, which supported a nonrespiratory cause for cyanosis, tachypnea, and exercise intolerance."
Breeds:
American Eskimo Dog (Dog) (VBO_0200046),
American Pit Bull Terrier (Dog) (VBO_0200054),
Borzoi (Dog) (VBO_0200197),
Chihuahua (Dog) (VBO_0200338),
Cockapoo (Dog) (VBO_0200370),
English Setter (Dog) (VBO_0200495),
Mixed Breed (Dog) (VBO_0200902),
Pomeranian (Dog) (VBO_0201043),
Poodle, Miniature (Dog) (VBO_0201051),
Rat Terrier (Dog) (VBO_0201125),
Welsh Corgi (Dog) (VBO_0201406).
Breeds in which the phene has been documented. (If a likely causal variant has been documented for the phene, see the variant table breeds in which the variant has been reported).
Associated gene:
Symbol | Description | Species | Chr | Location | OMIA gene details page | Other Links |
---|---|---|---|---|---|---|
CYB5R3 | cytochrome b5 reductase 3 | Canis lupus familiaris | 10 | NC_051814.1 (23565239..23592996) | CYB5R3 | Homologene, Ensembl , NCBI gene |
Variants
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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
OMIA Variant ID | Breed(s) | Variant Phenotype | Gene | Allele | Type of Variant | Source of Genetic Variant | Reference Sequence | Chr. | g. or m. | c. or n. | p. | Verbal Description | EVA ID | Year Published | PubMed ID(s) | Acknowledgements |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
850 | Mixed Breed (Dog) | Methaemoglobinaemia, CYB5R3-related | CYB5R3 | missense | Naturally occurring variant | CanFam3.1 | 10 | g.22832962G>A | c.227G>A | p.(G72S) | NM_001048084.1; NP_001041549.1; published as g.22832963G>A, c.214G>A - coordinates updated based on Table 1, Jaffey et al. (2020), reported in a single dog | 2017 | 28963729 | Variant coordinates obtained from or confirmed by EBI's Some Effect Predictor (VEP) tool | ||
967 | Chihuahua (Dog) Mixed Breed (Dog) Pomeranian (Dog) Rat Terrier (Dog) | Methaemoglobinaemia, CYB5R3-related | CYB5R3 | missense | Naturally occurring variant | CanFam3.1 | 10 | g.22836951A>C | c.580A>C | p.(I194L) | NM_001048084.1; NP_001041549.1 | 2018 | 29356095 | Genomic coordinates in CanFam3.1 provided by Zoe Shmidt and Robert Kuhn. | ||
1700 | Mixed Breed (Dog) | Methaemoglobinaemia, CYB5R3-related | CYB5R3 | missense | Naturally occurring variant | CanFam3.1 | 10 | NC_006592.3:22836975A>G | NM_001048084.1:c.604A>C | NP_001041549.1:p.(T202A) | reported in a single dog | 2020 | 33293645 | |||
1699 | American Pit Bull Terrier (Dog) Mixed Breed (Dog) | Methaemoglobinaemia, CYB5R3-related | CYB5R3 | missense | Naturally occurring variant | CanFam3.1 | 10 | NC_006592.3:22841895G>C | NM_001048084.1:c.656G>C | NP_001041549.1:p.(R219P) | 2020 | 33293645 |
Cite this entry
Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2024). OMIA:002131-9615: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70
References
Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.
2023 | Meadows, J.R.S., Kidd, J.M., Wang, G.D., Parker, H.G., Schall, P.Z., Bianchi, M., Christmas, M.J., Bougiouri, K., Buckley, R.M., Hitte, C., Nguyen, A.K., Wang, C., Jagannathan, V., Niskanen, J.E., Frantz, L.A.F., Arumilli, M., Hundi, S., Lindblad-Toh, K., Ginja, C., Agustina, K.K., André, C., Boyko, A.R., Davis, B.W., Drögemüller, M., Feng, X.Y., Gkagkavouzis, K., Iliopoulos, G., Harris, A.C., Hytönen, M.K., Kalthoff, D.C., Liu, Y.H., Lymberakis, P., Poulakakis, N., Pires, A.E., Racimo, F., Ramos-Almodovar, F., Savolainen, P., Venetsani, S., Tammen, I., Triantafyllidis, A., vonHoldt, B., Wayne, R.K., Larson, G., Nicholas, F.W., Lohi, H., Leeb, T., Zhang, Y.P., Ostrander, E.A. : |
Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture. Genome Biol 24:187, 2023. Pubmed reference: 37582787. DOI: 10.1186/s13059-023-03023-7. | |
2022 | Jaffey, J.A., Struthers, J.D., Yuh, E.L., Hostnik, E.T., Runyan, R.A., Reading, N.S. : |
Oral methylene blue treatment in a dog with cytochrome B5 reductase deficiency and 78, XX testicular disorder of sex development. Top Companion Anim Med 49:100649, 2022. Pubmed reference: 35202847. DOI: 10.1016/j.tcam.2022.100649. | |
2021 | Otsuka-Yamasaki, Y., Inanami, O., Shino, H., Sato, R., Yamasaki, M. : |
Characterization of a novel nicotinamide adenine dinucleotide-cytochrome b5 reductase mutation associated with canine hereditary methemoglobinemia. J Vet Med Sci 83:315-321, 2021. Pubmed reference: 33342963. DOI: 10.1292/jvms.20-0390. | |
2020 | Jaffey, J.A., Reading, N.S., Abdulmalik, O., Kreisler, R., Bullock, G., Wiest, A., Villani, N.A., Mhlanga-Mutangadura, T., Johnson, G.S., Cohn, L.A., Isaza, N., Harvey, J.W., Giger, U. : |
Clinical, metabolic, and molecular genetic characterization of hereditary methemoglobinemia caused by cytochrome b5 reductase deficiency in 30 dogs. Sci Rep 10:21399, 2020. Pubmed reference: 33293645. DOI: 10.1038/s41598-020-78391-2. | |
2018 | Shino, H., Otsuka-Yamasaki, Y., Sato, T., Ooi, K., Inanami, O., Sato, R., Yamasaki, M. : |
Familial congenital methemoglobinemia in Pomeranian dogs caused by a missense variant in the NADH-cytochrome B5 reductase gene. J Vet Intern Med 32:165-171, 2018. Pubmed reference: 29356095. DOI: 10.1111/jvim.15031. | |
2017 | Jaffey, J.A., Harmon, M.R., Villani, N.A., Creighton, E.K., Johnson, G.S., Giger, U., Dodam, J.R. : |
Long-term treatment with methylene blue in a dog with hereditary methemoglobinemia caused by cytochrome b5 reductase deficiency. J Vet Intern Med 31:1860-1865, 2017. Pubmed reference: 28963729. DOI: 10.1111/jvim.14843. | |
2014 | McKenna, J.A., Sacco, J., Son, T.T., Trepanier, L.A., Callan, M.B., Harvey, J.W., Arndt, J.W. : |
Congenital methemoglobinemia in a dog with a promoter deletion and a nonsynonymous coding variant in the gene encoding cytochrome b₅. J Vet Intern Med 28:1626-31, 2014. Pubmed reference: 25145387. DOI: 10.1111/jvim.12423. | |
1996 | Harvey, J.W. : |
Congenital erythrocyte enzyme deficiencies. Vet Clin North Am Small Anim Pract 26:1003-11, 1996. Pubmed reference: 8863387. DOI: 10.1016/s0195-5616(96)50052-5. | |
1991 | Harvey, J.W., King, R.R., Berry, C.R., Blue, J. T. : |
Methaemoglobin reductase deficiency in dogs. Comparative Haematology International 1:55-59, 1991. DOI: 10.1007/BF00422695. |
Edit History
- Created by Frank Nicholas on 21 Oct 2017
- Changed by Frank Nicholas on 21 Oct 2017
- Changed by Frank Nicholas on 23 Oct 2017
- Changed by Frank Nicholas on 02 Feb 2018
- Changed by Imke Tammen2 on 06 Aug 2021
- Changed by Imke Tammen2 on 11 Sep 2022
- Changed by Imke Tammen2 on 26 May 2024