OMIA 002385-7950 : Reproductive seasonality in Clupea harengus |
Symbol | Description | Species | Chr | Location | OMIA gene details page | Other Links |
---|---|---|---|---|---|---|
tshr | thyroid stimulating hormone receptor | Clupea harengus | 15 | NC_045166.1 (8873320..8908671) | tshr | Homologene, Ensembl, NCBI gene |
Variants
By default, variants are sorted chronologically by year of publication, to provide a historical perspective. Readers can re-sort on any column by clicking on the column header. Click it again to sort in a descending order. To create a multiple-field sort, hold down Shift while clicking on the second, third etc relevant column headers.
WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
OMIA Variant ID | Breed(s) | Variant Phenotype | Gene | Allele | Type of Variant | Source of Genetic Variant | Reference Sequence | Chr. | g. or m. | c. or n. | p. | Verbal Description | EVA ID | Inferred EVA rsID | Year Published | PubMed ID(s) | Acknowledgements |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1339 | Spring spawning | tshr | missense | Naturally occurring variant | Ch_v2.0.2 | 15 | g.8906859C>A | c.1411C>A | p.(L471M) | cDNA position based on transcript ENSCHAT00000005367.1 | 2021 | 34172814 |
References
Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.
2021 | Chen, J., Bi, H., Pettersson, M.E., Sato, D.X., Fuentes-Pardo, A.P., Mo, C., Younis, S., Wallerman, O., Jern, P., Molés, G., Gómez, A., Kleinau, G., Scheerer, P., Andersson, L. : | |
Functional differences between TSHR alleles associate with variation in spawning season in Atlantic herring. Commun Biol 4:795, 2021. Pubmed reference: 34172814. DOI: 10.1038/s42003-021-02307-7. | ||
2020 | Han, F., Jamsandekar, M., Pettersson, M.E., Su, L., Fuentes-Pardo, A.P., Davis, B.W., Bekkevold, D., Berg, F., Casini, M., Dahle, G., Farrell, E.D., Folkvord, A., Andersson, L. : | |
Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci. Elife 9:, 2020. Pubmed reference: 33274714. DOI: 10.7554/eLife.61076. | ||
2019 | Pettersson, M.E., Rochus, C.M., Han, F., Chen, J., Hill, J., Wallerman, O., Fan, G., Hong, X., Xu, Q., Zhang, H., Liu, S., Liu, X., Haggerty, L., Hunt, T., Martin, F.J., Flicek, P., Bunikis, I., Folkvord, A., Andersson, L. : | |
A chromosome-level assembly of the Atlantic herring genome-detection of a supergene and other signals of selection. Genome Res 29:1919-1928, 2019. Pubmed reference: 31649060. DOI: 10.1101/gr.253435.119. | ||
2017 | Lamichhaney, S., Fuentes-Pardo, A.P., Rafati, N., Ryman, N., McCracken, G.R., Bourne, C., Singh, R., Ruzzante, D.E., Andersson, L. : | |
Parallel adaptive evolution of geographically distant herring populations on both sides of the North Atlantic Ocean. Proc Natl Acad Sci U S A 114:E3452-E3461, 2017. Pubmed reference: 28389569. DOI: 10.1073/pnas.1617728114. | ||
2016 | Martinez Barrio, A., Lamichhaney, S., Fan, G., Rafati, N., Pettersson, M., Zhang, H., Dainat, J., Ekman, D., Höppner, M., Jern, P., Martin, M., Nystedt, B., Liu, X., Chen, W., Liang, X., Shi, C., Fu, Y., Ma, K., Zhan, X., Feng, C., Gustafson, U., Rubin, C.J., Sällman Almén, M., Blass, M., Casini, M., Folkvord, A., Laikre, L., Ryman, N., Ming-Yuen Lee, S., Xu, X., Andersson, L. : | |
The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing. Elife 5:, 2016. Pubmed reference: 27138043. DOI: 10.7554/eLife.12081. | ||
2013 | Nakane, Y., Ikegami, K., Iigo, M., Ono, H., Takeda, K., Takahashi, D., Uesaka, M., Kimijima, M., Hashimoto, R., Arai, N., Suga, T., Kosuge, K., Abe, T., Maeda, R., Senga, T., Amiya, N., Azuma, T., Amano, M., Abe, H., Yamamoto, N., Yoshimura, T. : | |
The saccus vasculosus of fish is a sensor of seasonal changes in day length. Nat Commun 4:2108, 2013. Pubmed reference: 23820554. DOI: 10.1038/ncomms3108. | ||
2012 | Lamichhaney, S., Martinez Barrio, A., Rafati, N., Sundström, G., Rubin, C.J., Gilbert, E.R., Berglund, J., Wetterbom, A., Laikre, L., Webster, M.T., Grabherr, M., Ryman, N., Andersson, L. : | |
Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring. Proc Natl Acad Sci U S A 109:19345-50, 2012. Pubmed reference: 23134729. DOI: 10.1073/pnas.1216128109. |
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- Created by Imke Tammen2 on 14 Aug 2021
- Changed by Imke Tammen2 on 14 Aug 2021