OMIA 002547-9913 : Haplotype with homozygous deficiency HH25 in Bos taurus
|Symbol||Description||Species||Chr||Location||OMIA gene details page||Other Links|
|RIOX1||Bos taurus||-||no genomic information (-..-)||RIOX1||Ensembl|
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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
|OMIA Variant ID||Breed(s)||Variant Phenotype||Gene||Allele||Type of Variant||Source of Genetic Variant||Reference Sequence||Chr.||g. or m.||c. or n.||p.||Verbal Description||EVA ID||Inferred EVA rsID||Year Published||PubMed ID(s)||Acknowledgements|
|1442||Swiss Holstein||Haplotype HH25 deficiency||RIOX1||deletion, gross (>20)||Naturally occurring variant||ARS-UCD1.2||10||g.84938408_84938437del||c.396_425del||p.(A133_E142del)||NM_001099702.1; NP_001093172.1; published as c.396_425delGGCGCAGACCCCGGCGGCACGCTTGGTGGA||2022||35361830|
|2022||Häfliger, I.M., Spengeler, M., Seefried, F.R., Drögemüller, C. :|
|Four novel candidate causal variants for deficient homozygous haplotypes in Holstein cattle. Sci Rep 12:5435, 2022. Pubmed reference: 35361830. DOI: 10.1038/s41598-022-09403-6.|
- Created by Frank Nicholas on 04 Apr 2022
- Changed by Frank Nicholas on 04 Apr 2022