OMIA:002691-13489 : Resistance/susceptibility to viral nervous necrosis in Dicentrarchus labrax (European seabass)

Categories: Immune system phene

Mendelian trait/disorder: no

Mode of inheritance: Multifactorial

Disease-related: yes

Key variant known: no

Cross-species summary: Viral nervous necrosis (VNN), also called viral encephalopathy and retinopathy (VER), is caused by the betanodavirus nervous necrosis virus (NNV).

Inheritance: Delpuech et al. (2023): "European sea bass exhibits genetic variation in resistance to VNN with a heritability ranging from 0.26 to 0.43 ... "

Mapping: Delpuech et al. (2023) "generated a dataset of 838,451 single nucleotide polymorphisms (SNPs) identified from whole-genome sequencing (WGS) in the parental generation of two commercial populations (A: 2371 individuals and B: 3428 individuals) of European sea bass with phenotypic records for binary survival in a VNN challenge. For each population, three cohorts were submitted to a red-spotted grouper nervous necrosis virus (RGNNV) challenge by immersion and genotyped on a 57K SNP chip. ... [The authors] found several QTL regions that were specific to one of the populations on different linkage groups (LG), and one 127-kb QTL region on LG12 that was shared by both populations and included the genes ZDHHC14, which encodes a palmitoyltransferase, and IFI6/IFI27-like, which encodes an interferon-alpha induced protein."

Cite this entry

Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2023). OMIA:002691-13489: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70

Reference

2023 Delpuech, E., Vandeputte, M., Morvezen, R., Bestin, A., Besson, M., Brunier, J., Bajek, A., Imarazene, B., François, Y., Bouchez, O., Cousin, X., Poncet, C., Morin, T., Bruant, J.S., Chatain, B., Haffray, P., Phocas, F., Allal, F. :
Whole-genome sequencing identifies interferon-induced protein IFI6/IFI27-like as a strong candidate gene for VNN resistance in European sea bass. Genet Sel Evol 55:30, 2023. Pubmed reference: 37143017. DOI: 10.1186/s12711-023-00805-2.

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  • Created by Imke Tammen2 on 09 May 2023