OMIA:002691-13489 : Resistance/susceptibility to viral nervous necrosis in Dicentrarchus labrax (European seabass) |
Categories: Immune system phene
Mendelian trait/disorder: no
Mode of inheritance: Multifactorial
Disease-related: yes
Key variant known: no
Cross-species summary: Viral nervous necrosis (VNN), also called viral encephalopathy and retinopathy (VER), is caused by the betanodavirus nervous necrosis virus (NNV).
Inheritance: Delpuech et al. (2023): "European sea bass exhibits genetic variation in resistance to VNN with a heritability ranging from 0.26 to 0.43 ... "
Mapping: Delpuech et al. (2023) "generated a dataset of 838,451 single nucleotide polymorphisms (SNPs) identified from whole-genome sequencing (WGS) in the parental generation of two commercial populations (A: 2371 individuals and B: 3428 individuals) of European sea bass with phenotypic records for binary survival in a VNN challenge. For each population, three cohorts were submitted to a red-spotted grouper nervous necrosis virus (RGNNV) challenge by immersion and genotyped on a 57K SNP chip. ... [The authors] found several QTL regions that were specific to one of the populations on different linkage groups (LG), and one 127-kb QTL region on LG12 that was shared by both populations and included the genes ZDHHC14, which encodes a palmitoyltransferase, and IFI6/IFI27-like, which encodes an interferon-alpha induced protein."
Cite this entry
Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2023). OMIA:002691-13489: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70
Reference
2023 | Delpuech, E., Vandeputte, M., Morvezen, R., Bestin, A., Besson, M., Brunier, J., Bajek, A., Imarazene, B., François, Y., Bouchez, O., Cousin, X., Poncet, C., Morin, T., Bruant, J.S., Chatain, B., Haffray, P., Phocas, F., Allal, F. : |
Whole-genome sequencing identifies interferon-induced protein IFI6/IFI27-like as a strong candidate gene for VNN resistance in European sea bass. Genet Sel Evol 55:30, 2023. Pubmed reference: 37143017. DOI: 10.1186/s12711-023-00805-2. |
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- Created by Imke Tammen2 on 09 May 2023