OMIA:002977-9796 : Lipase deficiency, combined, LMF1-related in Equus caballus (domestic horse) |
Categories: Homeostasis / metabolism phene , Endocrine / exocrine gland phene (incl mammary gland) , Liver/biliary system phene
Links to possible relevant human trait(s) and/or gene(s) in OMIM: 246650 (trait) , 611761 (gene)
Single-gene trait/disorder: yes
Mode of inheritance: Autosomal recessive
Disease-related: yes
Key variant known: yes
Year key variant first reported: 2025
Species-specific name: Hypertriglyceridemia-induced pancreatitis
Species-specific symbol: HIP
Molecular basis:
The LMF1 gene encodes lipase maturation factor 1, a transmembrane protein in the endoplasmic reticulum required for the correct posttranslational maturation of the enzymes lipoprotein lipase (LPL) and hepatic lipase (HPL). Loss-of-function of LMF1 results in severe primary hypertriglyceridemia, which may trigger episodes of acute pancreatitis (Alves et al. 2024).
Drögemüller et al. (2025): "Whole genome sequencing of an affected foal identified a homozygous loss of function variant in LMF1 encoding lipase maturation factor 1 [omia.variant:1823]. The variant, XM_023616679.1:c.369_373delinsTCT, leads to an early frameshift and is predicted to alter or truncate 78% of the LMF1 coding sequence. [The authors] genotyped the variant in a cohort of 2122 FM horses and identified 11 homozygous mutant animals including all eight foals that had initially been identified based on their clinical presentation. [All] homozygous mutant animals had a comparable phenotype and were inbred to the same stallion."
Clinical features:
The main diagnostic feature of affected animals are severely elevated plasma triglyceride levels above 10 mmol/l compared to the reference range of 0.6-1 mmol/l for foals and 0.17-0.59 mmol/l for adult horses (Drögemüller et al. 2025).
Drögemüller et al. (2025) reported 11 affected Franches-Montagnes horses: "Ten of the 11 affected horses died or were euthanized between 6 days and 3 months of age due to severe pancreatitis. The most common clinical signs in affected foals included apathy, reluctance to nurse, abdominal distension and diarrhea, with fever observed in some cases. Other common clinicopathological abnormalities in foals included hypoproteinemia, azotemia, hyperbilirubinemia, hyperlipasemia, and elevated serum amyloid A concentrations. ... One affected horse, a 13 year-old gelding, survived until adulthood and presented with a history of chronic weight loss, diarrhea, and intermittent fever, which had acutely worsened. ... The horse was humanely euthanized after several days of treatment due to its lengthy medical history and compromised quality of life."
Pathology: Drögemüller et al. (2025): "Pathological examinations in eight affected foals revealed severe, acute to chronic necrotizing pancreatitis and extensive fibronecrotizing peritonitis. The affected adult horse was diagnosed with severe, multifocal, chronic active cholangiohepatitis and acute necrotizing hepatitis, mild chronic pancreatic fibrosis, and mild multifocal chronic peritoneal fibrosis."
Prevalence: Drögemüller et al. (2025) reported a 15% carrier frequency for omia.variant:1823 in 2111 unaffected Franches-Montagnes horses at the time of variant discovery.
Breed:
Freiberger (Horse) (VBO_0000965).
Breeds in which the phene or likely causal variants have been documented. If a likely causal variant has been documented, see variant-specific breed information in the variant table. (Breed information may be incomplete).
Associated gene:
| Symbol | Description | Species | Chr | Location | OMIA gene details page | Other Links |
|---|---|---|---|---|---|---|
| LMF1 | lipase maturation factor 1 | Equus caballus | 13 | NC_091696.1 (53072177..53164847) | LMF1 | Ensembl, NCBI gene |
Variants
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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
| OMIA Variant ID | Breed(s) | Variant Phenotype | Gene | Allele | Variant Type | Variant Effect | Source of Genetic Variant | Pathogenicity Classification* | Reference Sequence | Chr. | g. or m. | c. or n. | p. | Verbal Description | EVA ID | Year Published | PubMed ID(s) | Acknowledgements |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1823 | Freiberger (Horse) | Hypertriglyceridemia-induced pancreatitis | LMF1 | HIP | delins, small (<=20) | frameshift | Naturally occurring variant | Not currently evaluated | EquCab3.0 | NC_009156.3:g.42,935,259_42,935,263delinsTCT | XM_023616679.1:c.369_373delinsTCT | XP_023472447.1:p.(L125Rfs*193 | 2025 | 40764662 |
* Variant pathogenicity for single gene diseases as evaluated by an expert panel of the International Society of Animal Genetics (ISAG) Animal Genetic Testing Standardization Standing Committee
Clinical synopsis/links to phenotypes
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Cite this entry
Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2025). OMIA:002977-9796: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70
References
Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.
| 2025 | Drögemüller, M., Fouché, N., Wyler, M., Gurtner, C., Meister, S.L., Neuditschko, M., Jagannathan, V., Gerber, V., Leeb, T. : |
| LMF1 frameshift deletion in Franches-Montagnes horses with hypertriglyceridemia-induced pancreatitis. Sci Rep 15:28667, 2025. Pubmed reference: 40764662. DOI: 10.1038/s41598-025-13954-9. | |
| 2024 | Alves, M., Laranjeira, F., Correia-da-Silva, G. : |
| Understanding Hypertriglyceridemia: Integrating Genetic Insights. Genes (Basel) 15:190, 2024. Pubmed reference: 38397180. DOI: 10.3390/genes15020190. |
Edit History
- Created by Imke Tammen2 on 09 Aug 2025
- Changed by Imke Tammen2 on 09 Aug 2025
- Changed by Tosso Leeb on 27 Aug 2025
- Changed by Imke Tammen2 on 22 Sep 2025