OMIA:002977-9796 : Lipase deficiency, combined, LMF1-related in Equus caballus (domestic horse)

Categories: Homeostasis / metabolism phene , Endocrine / exocrine gland phene (incl mammary gland) , Liver/biliary system phene

Links to possible relevant human trait(s) and/or gene(s) in OMIM: 246650 (trait) , 611761 (gene)

Single-gene trait/disorder: yes

Mode of inheritance: Autosomal recessive

Disease-related: yes

Key variant known: yes

Year key variant first reported: 2025

Species-specific name: Hypertriglyceridemia-induced pancreatitis

Species-specific symbol: HIP

Molecular basis: The LMF1 gene encodes lipase maturation factor 1, a transmembrane protein in the endoplasmic reticulum required for the correct posttranslational maturation of the enzymes lipoprotein lipase (LPL) and hepatic lipase (HPL). Loss-of-function of LMF1 results in severe primary hypertriglyceridemia, which may trigger episodes of acute pancreatitis (Alves et al. 2024).
Drögemüller et al. (2025): "Whole genome sequencing of an affected foal identified a homozygous loss of function variant in LMF1 encoding lipase maturation factor 1 [omia.variant:1823]. The variant, XM_023616679.1:c.369_373delinsTCT, leads to an early frameshift and is predicted to alter or truncate 78% of the LMF1 coding sequence. [The authors] genotyped the variant in a cohort of 2122 FM horses and identified 11 homozygous mutant animals including all eight foals that had initially been identified based on their clinical presentation. [All] homozygous mutant animals had a comparable phenotype and were inbred to the same stallion."

Clinical features: The main diagnostic feature of affected animals are severely elevated plasma triglyceride levels above 10 mmol/l compared to the reference range of 0.6-1 mmol/l for foals and 0.17-0.59 mmol/l for adult horses (Drögemüller et al. 2025). 
Drögemüller et al. (2025) reported 11 affected Franches-Montagnes horses: "Ten of the 11 affected horses died or were euthanized between 6 days and 3 months of age due to severe pancreatitis. The most common clinical signs in affected foals included apathy, reluctance to nurse, abdominal distension and diarrhea, with fever observed in some cases. Other common clinicopathological abnormalities in foals included hypoproteinemia, azotemia, hyperbilirubinemia, hyperlipasemia, and elevated serum amyloid A concentrations. ... One affected horse, a 13 year-old gelding, survived until adulthood and presented with a history of chronic weight loss, diarrhea, and intermittent fever, which had acutely worsened. ... The horse was humanely euthanized after several days of treatment due to its lengthy medical history and compromised quality of life."

Pathology: Drögemüller et al. (2025): "Pathological examinations in eight affected foals revealed severe, acute to chronic necrotizing pancreatitis and extensive fibronecrotizing peritonitis. The affected adult horse was diagnosed with severe, multifocal, chronic active cholangiohepatitis and acute necrotizing hepatitis, mild chronic pancreatic fibrosis, and mild multifocal chronic peritoneal fibrosis."

Prevalence: Drögemüller et al. (2025) reported a 15% carrier frequency for omia.variant:1823 in 2111 unaffected Franches-Montagnes horses at the time of variant discovery.  

Breed: Freiberger (Horse) (VBO_0000965).
Breeds in which the phene or likely causal variants have been documented. If a likely causal variant has been documented, see variant-specific breed information in the variant table. (Breed information may be incomplete).

Associated gene:

Symbol Description Species Chr Location OMIA gene details page Other Links
LMF1 lipase maturation factor 1 Equus caballus 13 NC_091696.1 (53072177..53164847) LMF1 Ensembl, NCBI gene

Variants

By default, variants are sorted chronologically by year of publication, to provide a historical perspective. Readers can re-sort on any column by clicking on the column header. Click it again to sort in a descending order. To create a multiple-field sort, hold down Shift while clicking on the second, third etc relevant column headers.

WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.

Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.

OMIA Variant ID Breed(s) Variant Phenotype Gene Allele Variant Type Variant Effect Source of Genetic Variant Pathogenicity Classification* Reference Sequence Chr. g. or m. c. or n. p. Verbal Description EVA ID Year Published PubMed ID(s) Acknowledgements
1823 Freiberger (Horse) Hypertriglyceridemia-induced pancreatitis LMF1 HIP delins, small (<=20) frameshift Naturally occurring variant Not currently evaluated EquCab3.0 NC_009156.3:g.42,935,259_42,935,263delinsTCT XM_023616679.1:c.369_373delinsTCT XP_023472447.1:p.(L125Rfs*193 2025 40764662

* Variant pathogenicity for single gene diseases as evaluated by an expert panel of the International Society of Animal Genetics (ISAG) Animal Genetic Testing Standardization Standing Committee

Clinical synopsis/links to phenotypes

Variant Phenotype(s) References (Pubmed ID)
1823 HP:0003270: Abdominal distention
NBO:0000602: apathy
HP:0002157: Azotemia
MP:0005036: diarrhea
HP:0033332: Elevated circulating amyloid A concentration
HP:0001945: Fever
HP:0012115: Hepatitis
HP:0002904: Hyperbilirubinemia
HP:0003075: Hypoproteinemia
WBPhenotype:0000062: lethal
HP:0100732: Pancreatic fibrosis
HP:0001733: Pancreatitis
HP:0002586: Peritonitis
HP:0001954: Recurrent fever
MP:0001263: weight loss
40764662

Contact us

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Cite this entry

Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2025). OMIA:002977-9796: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70

References

Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.

2025 Drögemüller, M., Fouché, N., Wyler, M., Gurtner, C., Meister, S.L., Neuditschko, M., Jagannathan, V., Gerber, V., Leeb, T. :
LMF1 frameshift deletion in Franches-Montagnes horses with hypertriglyceridemia-induced pancreatitis. Sci Rep 15:28667, 2025. Pubmed reference: 40764662. DOI: 10.1038/s41598-025-13954-9.
2024 Alves, M., Laranjeira, F., Correia-da-Silva, G. :
Understanding Hypertriglyceridemia: Integrating Genetic Insights. Genes (Basel) 15:190, 2024. Pubmed reference: 38397180. DOI: 10.3390/genes15020190.

Edit History


  • Created by Imke Tammen2 on 09 Aug 2025
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