OMIA:002175-9796 : Curly coat with hypotrichosis in Equus caballus |
Categories: Integument (skin) phene
Possibly relevant human trait(s) and/or gene(s) (MIM number): 608613 (gene)
Links to MONDO diseases: No links.
Mendelian trait/disorder: no
Considered a defect: yes
Key variant known: yes
Year key variant first reported: 2018
Inheritance: Thomer et al. (2018) reported that genotypes at two genes, KRT25 and SP6, each with two alleles, could explain all combinations of curly +/- and hypotrichosis +/-: "Horses heterozygous or homozygous only for KRT25 variant [see below] showed curly coat and hypotrichosis, whereas horses with SP6 variant [see below] only, exhibited curly coat without hypotrichosis. Horses with mutant alleles in both variants developed curly hair and hypotrichosis. Thus, mutant KRT25 allele is masking SP6 allele effect, indicative for epistasis of KRT25 variant over SP6 variant."
Molecular basis: Thomer et al. (2018) identified two likely causal variants: g.21891160G>A; p.R89H in the KRT25 gene, and g. 24022045C>T; p.G364S in the SP6 gene. An independent discovery of the KRT25 variant in relation to Curly coat (see OMIA 000245-9796) was published while the MS by Thomer et al. was undergoing peer review. As explained in the Inheritance section, Tomer et al. (2018) "demonstrated an epistatic effect of KRT25 variant on SP6 variant due to its pleiotropy on hair structure and hair loss."
Breeds: Bashkir Curly (Horse) (VBO_0000913), Missouri Fox Trotter, Germany (Horse) (VBO_0011358).
Associated gene:
| Symbol | Description | Species | Chr | Location | OMIA gene details page | Other Links |
|---|---|---|---|---|---|---|
| SP6 | Sp6 transcription factor | Equus caballus | 11 | NC_009154.3 (24099790..24093883) | SP6 | Homologene, Ensembl , NCBI gene |
Variants
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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
| OMIA Variant ID | Breed(s) | Variant Phenotype | Gene | Allele | Type of Variant | Source of Genetic Variant | Reference Sequence | Chr. | g. or m. | c. or n. | p. | Verbal Description | EVA ID | Inferred EVA rsID | Year Published | PubMed ID(s) | Acknowledgements |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1040 | Bashkir Curly (Horse) Missouri Fox Trotter, Germany (Horse) | Curly coat with/without hypotrichosis | SP6 | missense | Naturally occurring variant | EquCab3.0 | 11 | g.24096309C>T | c.1090G>A | p.(D364N) | Thomer et al. (2018): "SP6; NC_009154.2:g.24022045C>T, ss3021042887" with respect to EquCab2. Updated coordinates in this entry obtained from EVA rs1095048852; 14 Mar 2019 | rs1095048852 | rs1095048852 | 2018 | 29686323 |
Reference
| 2018 | Thomer, A., Gottschalk, M., Christmann, A., Naccache, F., Jung, K., Hewicker-Trautwein, M., Distl, O., Metzger, J. : |
| An epistatic effect of KRT25 on SP6 is involved in curly coat in horses. Sci Rep 8:6374, 2018. Pubmed reference: 29686323 . DOI: 10.1038/s41598-018-24865-3. |
Edit History
- Created by Frank Nicholas on 14 Mar 2019
- Changed by Frank Nicholas on 14 Mar 2019