OMIA:002246-9925 : Height, LCORL-associated body-size variation in Capra hircus (goat) |
In other species: dog , horse , taurine cattle
Categories: Growth / size / body region phene
Links to possible relevant human trait(s) and/or gene(s) in OMIM: 611799 (gene)
Mendelian trait/disorder: no
Mode of inheritance: Multifactorial
Disease-related: no
Key variant known: no
Markers: Saif et al. (2020) reported that "A search for signatures that are shared across large-sized goat breeds revealed that five medium-to-large-sized Pakistani goat breeds had a common selection signature on chromosome 6 in a region harboring the LCORL gene, which has been shown to modulate height or body size in several mammalian species. Fine-mapping of the region confirmed that all five goat breeds with the selection signature were nearly fixed for the same haplotype in a ~191 kb region spanning positions 37,747,447–37,938,449. From the pool sequencing data, we identified a frame-shifting single base insertion into an isoform-specific exon of LCORL as a potential candidate causal variant mediating the size-increasing effect." The variant can be designated as XM_018049322.1:c.828_829insA or XP_017904811.1:p.(Ser277Ilefs*38). The authors cautioned that this represents a preliminary finding. Proving the causality of this variant for the size increasing effect will require further studies (Saif et al., 2020).
Breeds:
Barbari (Goat) (VBO_0000728),
Beetal (Goat) (VBO_0000729),
Dera Din Panah, Pakistan (Goat) (VBO_0009774),
Kamori (Goat) (VBO_0000783),
Nachi, Pakistan (Goat) (VBO_0009786).
Breeds in which the phene has been documented. (If a likely causal variant has been documented for the phene, see the variant table breeds in which the variant has been reported).
Associated gene:
Symbol | Description | Species | Chr | Location | OMIA gene details page | Other Links |
---|---|---|---|---|---|---|
LCORL | Capra hircus | 6 | NC_030813.1 (38069012..37904351) | LCORL | Homologene, Ensembl , NCBI gene |
Cite this entry
Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2020). OMIA:002246-9925: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70
Reference
2020 | Saif, R., Henkel, J., Jagannathan, V., Drögemüller, C., Flury, C., Leeb, T. : |
The <i>LCORL</i> Locus is under Selection in Large-Sized Pakistani Goat Breeds. Genes (Basel) 11:168, 2020. Pubmed reference: 32033434. DOI: 10.3390/genes11020168. |
Edit History
- Created by Frank Nicholas on 13 Feb 2020
- Changed by Frank Nicholas on 13 Feb 2020
- Changed by Tosso Leeb on 15 Feb 2020