OMIA:002271-9913 : Immunodeficiency, IL17RA-related in Bos taurus
Categories: Immune system phene
Possibly relevant human trait(s) and/or gene(s)s (MIM numbers): 613953 (trait) , 605461 (gene)
Links to MONDO diseases:
Mendelian trait/disorder: yes
Mode of inheritance: Autosomal recessive
Considered a defect: yes
Key variant known: yes
Year key variant first reported: 2020
Inheritance: Häfliger et al. (2020): " Pedigree analysis indicated autosomal recessive inheritance. . . . Genotyping of the affected cattle family [with the IL17RA c.180delC variant] confirmed recessive inheritance"
Molecular basis: Häfliger et al. (2020): "Variant calling and filtering against the 1000 Bull Genomes variant catalogue resulted in the detection of a single homozygous protein-changing variant exclusively present in both sequenced genomes. This single-nucleotide deletion in exon 3 of IL17RA on bovine chromosome 5 was predicted to have a deleterious impact on the encoded protein due to a frameshift leading to a truncated gene product."
Clinical features: Häfliger et al. (2020): "The two calves showed retarded growth and suffered from severe ulcerative dermatitis with hyperkeratosis, alopecia furunculosis and subcutaneous abscess formation. Blood analysis showed correspondent leukocytosis with neutrophilia whereas minerals, macro- and micronutrients were within the reference ranges. . . . This IL17RA-associated semi lethal genodermatosis, leading to psoriasis-like skin alterations and immunodeficiency resembling zinc deficiency-like syndrome in Holstein cattle, was not reported before."
Breed: Holstein (black and white) (Cattle) (VBO_0000237).
|Symbol||Description||Species||Chr||Location||OMIA gene details page||Other Links|
|IL17RA||interleukin 17 receptor A||Bos taurus||5||NC_037332.1 (108807812..108823741)||IL17RA||Homologene, Ensembl , NCBI gene|
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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
|OMIA Variant ID||Breed(s)||Variant Phenotype||Gene||Allele||Type of Variant||Source of Genetic Variant||Reference Sequence||Chr.||g. or m.||c. or n.||p.||Verbal Description||EVA ID||Inferred EVA rsID||Year Published||PubMed ID(s)||Acknowledgements|
|1202||Holstein (black and white) (Cattle)||Immunodeficiency, IL17Ra-related||IL17RA||deletion, small (<=20)||Naturally occurring variant||ARS-UCD1.2||5||g.108813251del||c.180del||p.(C61Afs*62)||XM_015460734.2: c.180delC; XP_015316220.2: p.(Cys61AlafsTer62) (Häfliger et al., 2020)||2020||32448141|
|2020||Häfliger, I.M., Sickinger, M., Holsteg, M., Raeder, L.M., Henrich, M., Marquardt, S., Drögemüller, C., Lühken, G. :|
|An IL17RA frameshift variant in a Holstein cattle family with psoriasis-like skin alterations and immunodeficiency BMC Genetics 21:55, 2020. Pubmed reference: 32448141 . DOI: 10.1186/s12863-020-00860-4.|
- Created by Frank Nicholas on 26 May 2020
- Changed by Frank Nicholas on 29 May 2020
- Changed by Frank Nicholas on 02 Jun 2020