OMIA:002466-9135 : Beak colour, BCO2-related in Serinus canaria

In other species: woodpecker finch , large cactus finch , medium ground-finch , small ground finch , large ground finch , common cactus finch , sharp-beaked ground finch , small tree finch , large tree finch , medium tree finch , Cocos finch , mangrove finch , Española cactus finch & Genovesa ground finch

Categories: Pigmentation phene

Possibly relevant human trait(s) and/or gene(s) (MIM number): 611740 (gene)

Links to MONDO diseases: No links.

Mendelian trait/disorder: yes

Considered a defect: no

Key variant known: yes

Year key variant first reported: 2020

Cross-species summary: Bill colour, BCO2-related

Associated gene:

Symbol Description Species Chr Location OMIA gene details page Other Links
BCO2 beta-carotene oxygenase 2 Serinus canaria 24 NC_066337.1 (5969301..5984171) BCO2 Homologene, Ensembl , NCBI gene

Variants

By default, variants are sorted chronologically by year of publication, to provide a historical perspective. Readers can re-sort on any column by clicking on the column header. Click it again to sort in a descending order. To create a multiple-field sort, hold down Shift while clicking on the second, third etc relevant column headers.

WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.

Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.

OMIA Variant ID Breed(s) Variant Phenotype Gene Allele Type of Variant Source of Genetic Variant Reference Sequence Chr. g. or m. c. or n. p. Verbal Description EVA ID Inferred EVA rsID Year Published PubMed ID(s) Acknowledgements
1559 Beak and leg colour, red BCO2 missense Naturally occurring variant NW_022042652.1 g.75258192G>A p.R413H 2020 31930402 XP_009096268.1, genomic position as reported by Bovo et al. (2023) PMID:37194440

Cite this entry

Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2023). OMIA:002466-9135: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70

References

Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.

2023 Bovo, S., Ribani, A., Utzeri, V.J., Taurisano, V., Bertarini, G., Fontanesi, L. :
Whole genome sequencing identifies candidate genes and mutations that can explain diluted and other colour varieties of domestic canaries (Serinus canaria). Anim Genet 54:510-525, 2023. Pubmed reference: 37194440 . DOI: 10.1111/age.13331.
2020 Gazda, M.A., Toomey, M.B., Araújo, P.M., Lopes, R.J., Afonso, S., Myers, C.A., Serres, K., Kiser, P.D., Hill, G.E., Corbo, J.C., Carneiro, M. :
Genetic basis of de novo ppearance of carotenoid ornamentation in bare parts of canaries. Mol Biol Evol 37:1317-1328, 2020. Pubmed reference: 31930402 . DOI: 10.1093/molbev/msaa006.

Edit History


  • Created by Imke Tammen2 on 18 May 2023
  • Changed by Imke Tammen2 on 18 May 2023