OMIA:000214-89462 : Coat colour, white spotting in Bubalus bubalis (water buffalo) |
In other species: dog , domestic cat , horse , llama , taurine cattle , domestic guinea pig
Categories: Pigmentation phene , Hearing / vestibular / ear phene
Links to possible relevant human trait(s) and/or gene(s) in OMIM: 193510 (trait) , 103500 (trait) , 156845 (gene)
Mendelian trait/disorder: yes
Disease-related: no
Key variant known: yes
Year key variant first reported: 2015
Cross-species summary: Variable degree of white spotting ranging from tiny white spots up to completely white animals. The absence of pigment is caused by the absence of skin melanocytes ("leucism, leucistic"), not by failure in the biochemical reactions required for pigment synthesis.
Molecular basis:
Yusnizar et al. (2015): "Two independent loss-of-function mutations, a premature stop codon (c.328C>T, p.Arg110*) and a donor splice-site mutation (c.840+2T>A, p.Glu281_Leu282Ins8), both of which cause white-spotted coat color in swamp buffaloes, were identified. The nonsense mutation leads to a premature stop codon in exon 3, and likely removal of the resulting mRNA via nonsense-mediated decay pathway, whereas the donor splice-site mutation leads to aberrant splicing of exon 8 that encodes part of a highly conserved region of MITF. The resulting insertion of eight amino acid residues is expected to perturb the leucine zipper part in the basic helix-loop-helix leucine zipper (bHLH-Zip) domain and will most likely influence dimerization and DNA binding capacity."
Dai et al. (2024) "successfully validated these two previously identified mutations in MITF [Yusnizar et al., 2015] and detected the KIT gene as another candidate responsible for the manifestation of the white spotting in swamp buffaloes [see OMIA:001737-89462 for details]. ... These mutations jointly explained 95% of the white spotting in swamp buffaloes .... [The authors] also found evidence for other candidate genes relevant to the white spotting."
Associated gene:
Symbol | Description | Species | Chr | Location | OMIA gene details page | Other Links |
---|---|---|---|---|---|---|
MITF | microphthalmia-associated transcription factor | Bubalus bubalis | 21 | NC_059177.1 (31775071..31544437) | MITF | Homologene, Ensembl , NCBI gene |
Variants
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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
OMIA Variant ID | Breed(s) | Variant Phenotype | Gene | Allele | Type of Variant | Source of Genetic Variant | Reference Sequence | Chr. | g. or m. | c. or n. | p. | Verbal Description | EVA ID | Year Published | PubMed ID(s) | Acknowledgements |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
409 | Swamp buffalo (Buffalo) | White spotting | MITF | splicing | Naturally occurring variant | UOA_WB_1 | 21 | NC_037565.1:g.31613452A>T | XM_025273060.1:c.1179+2T>A | Published as c.840+2T>A, coordinates in the table have been updated to reflect a recent reference genome. | 2015 | 26417640 | ||||
341 | Swamp buffalo (Buffalo) | White spotting | MITF | nonsense (stop-gain) | Naturally occurring variant | UOA_WB_1 | 21 | NC_037565.1:g.31637770G>A | XM_025273060.1:c.649C>T | XP_025128845.1:p.(R217*) | Published as c.328C>T , p.(R110*), coordinates in the table have been updated to reflect a recent reference genome. |
2015 | 26417640 |
Cite this entry
Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2024). OMIA:000214-89462: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70
References
Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.
2024 | Dai, D., Sari, E.M., Si, J., Ashari, H., Dagong, M.I.A., Pauciullo, A., Lenstra, J.A., Han, J., Zhang, Y. : |
Genomic analysis reveals the association of KIT and MITF variants with the white spotting in swamp buffaloes. BMC Genomics 25:713, 2024. Pubmed reference: 39048931. DOI: 10.1186/s12864-024-10634-2. | |
2015 | Yusnizar, Y., Wilbe, M., Herlino, A.O., Sumantri, C., Noor, R.R., Boediono, A., Andersson, L., Andersson, G. : |
Microphthalmia-associated transcription factor mutations are associated with white-spotted coat color in swamp buffalo. Anim Genet 46:676-682, 2015. Pubmed reference: 26417640. DOI: 10.1111/age.12334. |
Edit History
- Created by Frank Nicholas on 31 Dec 2015
- Changed by Frank Nicholas on 31 Dec 2015
- Changed by Frank Nicholas on 15 May 2020
- Changed by Imke Tammen2 on 24 Aug 2024