OMIA 001216-9823 : Coat colour, roan in Sus scrofa
|Symbol||Description||Species||Chr||Location||OMIA gene details page||Other Links|
|KIT||v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog||Sus scrofa||8||NC_010450.4 (41402334..41492306)||KIT||Homologene, Ensembl, NCBI gene|
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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
|Breed(s)||Variant Phenotype||Gene||Allele||Type of Variant||Reference Sequence||Chr.||g. or m.||c. or n.||p.||Verbal Description||EVA ID||Year Published||PubMed ID(s)||Acknowledgements|
|Coat colour, roan||KIT||splicing||8||a U(26) repeat in intron 5 of the KIT gene, which is likely to mediate skipping of exon 5 of the gene in some tissues including skin||2011||21749430|
Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.
|2011||Cho, IC., Zhong, T., Seo, BY., Jung, EJ., Yoo, CK., Kim, JH., Lee, JB., Lim, HT., Kim, BW., Lee, JH., Ko, MS., Jeon, JT. :|
|Whole-genome association study for the roan coat color in an intercrossed pig population between Landrace and Korean native pig. Genes Genom 33:17–23, 2011. DOI: https://doi.org/10.1007/s13258-010-0108-4.|
|Lim, HT., Zhong, T., Cho, IC., Seo, BY., Kim, JH., Lee, SS., Ko, MS., Park, HB., Kim, BW., Lee, JH., Jeon, JT. :|
|Novel alternative splicing by exon skipping in KIT associated with whole-body roan in an intercrossed population of Landrace and Korean Native pigs. Anim Genet 42:451-5, 2011. Pubmed reference: 21749430. DOI: 10.1111/j.1365-2052.2011.02225.x.|
|2010||Fontanesi, L., D'Alessandro, E., Scotti, E., Liotta, L., Crovetti, A., Chiofalo, V., Russo, V. :|
|Genetic heterogeneity and selection signature at the KIT gene in pigs showing different coat colours and patterns. Anim Genet 41:478-92, 2010. Pubmed reference: 20477793. DOI: 10.1111/j.1365-2052.2010.02054.x.|
|2008||Hadjiconstantouras, C., Sargent, CA., Skinner, TM., Archibald, AL., Haley, CS., Plastow, GS. :|
|Characterization of the porcine KIT ligand gene: expression analysis, genomic structure, polymorphism detection and association with coat colour traits. Anim Genet 39:217-24, 2008. Pubmed reference: 18318788. DOI: 10.1111/j.1365-2052.2008.01708.x.|
- Created by Frank Nicholas on 15 Jul 2011
- Changed by Frank Nicholas on 08 Oct 2011
- Changed by Frank Nicholas on 09 Dec 2011