OMIA:000202-8409 : Coat/skin colour, oculocutaneous albinism type I (OCA1), TYR-related in Pelophylax nigromaculatus (dark-spotted frog) |
In other species: Japanese medaka , axolotl , Japanese wrinkled frog , Tufted capuchin , Rhesus monkey , hamadryas baboon , dog , red fox , domestic ferret , domestic cat , lion , humpback whale , ass (donkey) , pig , red deer , American bison , taurine cattle , rabbit , golden hamster , Mongolian gerbil , domestic guinea pig , Japanese ratsnake , ball python , water buffalo , four-striped grass mouse , ocelot gecko , American mink , Japanese raccoon dog , Rice frog
Categories: Pigmentation phene , Vision / eye phene
Links to possible relevant human trait(s) and/or gene(s) in OMIM: 203100 (trait) , 606952 (trait) , 606933 (gene)
Mendelian trait/disorder: yes
Disease-related: no
Key variant known: yes
Year key variant first reported: 2018
Cross-species summary: Congenital lack of pigment in most parts of the body. Due to a non-functional form of the enzyme tyrosinase. Also known as oculocutaneous albinism (OCA), acromelanism and as the Himalayan coat-colour pattern
Molecular basis: Miura et al. (2018) reported three likely causal variants: c.1244_1245insT; c.768_769insT; c.682_684del3 (p.228delLys), each giving rise to an alleles for albinism.
Associated gene:
| Symbol | Description | Species | Chr | Location | OMIA gene details page | Other Links |
|---|---|---|---|---|---|---|
| TYR | Pelophylax nigromaculatus | - | no genomic information (-..-) | TYR | Ensembl |
Variants
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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
| OMIA Variant ID | Breed(s) | Variant Phenotype | Gene | Allele | Type of Variant | Source of Genetic Variant | Reference Sequence | Chr. | g. or m. | c. or n. | p. | Verbal Description | EVA ID | Year Published | PubMed ID(s) | Acknowledgements |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 814 | Albinism | TYR | insertion, small (<=20) | Naturally occurring variant | c.1244_1245insT | 2018 | 28674275 | |||||||||
| 816 | Albinism | TYR | deletion, small (<=20) | Naturally occurring variant | c.682_684del | p.(L228del) | 2018 | 28674275 | ||||||||
| 815 | Albinism | TYR | insertion, small (<=20) | Naturally occurring variant | c.768_769insT | 2018 | 28674275 |
Cite this entry
Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2020). OMIA:000202-8409: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70
Reference
| 2018 | Miura, I., Tagami, M., Fujitani, T., Ogata, M. : |
| Spontaneous tyrosinase mutations identified in albinos of three wild frog species. Genes Genet Syst 92:189-196, 2018. Pubmed reference: 28674275. DOI: 10.1266/ggs.16-00061. |
Edit History
- Created by Frank Nicholas on 04 Sep 2017
- Changed by Frank Nicholas on 31 Mar 2020