OMIA:001199-37699 : Coat colour, extension in Notoryctes typhlops (marsupial mole)

In other species: lorises , coyote , dog , red fox , American black bear , domestic cat , jaguar , ass (donkey) , domestic horse , Przewalski's horse , pig , Arabian camel , reindeer , taurine cattle , indicine cattle (zebu) , goat , sheep , rabbit , Mongolian gerbil , domestic guinea pig , domestic yak , fallow deer , alpaca , gray squirrel , raccoon dog , antarctic fur seal , woolly mammoth , rock pocket mouse , oldfield mouse , lesser earless lizard , Geoffroy's cat , jaguarundi , little striped whiptail , water buffalo , Arctic fox , Colocolo

Categories: Pigmentation phene

Links to possible relevant human trait(s) and/or gene(s) in OMIM: 266300 (trait) , 155555 (gene)

Single-gene trait/disorder: yes

Disease-related: no

Key variant known: yes

Year key variant first reported: 2025

Cross-species summary: The extension locus encodes the melanocyte-stimulating hormone receptor (MSHR; now known as MC1R). This receptor controls the level of tyrosinase within melanocytes. Tyrosinase is the limiting enzyme involved in synthesis of melanins: high levels of tyrosinase result in the production of eumelanin (dark colour, e.g. brown or black), while low levels result in the production of phaeomelanin (light colour, e.g. red or yellow). When melanocyte-stimulating hormone (MSH) binds to its receptor, the level of tyrosinase is increased, leading to production of eumelanin. The wild-type allele at the extension locus corresponds to a functional MSHR, and hence to dark pigmentation in the presence of MSH. As explained by Schneider et al. (PLoS Genet 10(2): e1004892; 2015), "The most common causes of melanism (black coat) mutations are gain-of-function alterations in MC1R, or loss-of function alterations in ASIP, which encodes Agouti signaling protein, a paracrine signaling molecule that inhibits MC1R signaling". Mutations in MC1R have been associated with white colouring in several species.

Molecular basis: Sauerman et al. (2025) investigated the normal coat colour of marsupial moles, who all have a cream to pale-yellow coat, lacking dark eumelanin deposition. The authors aligned the southern marsupial mole MC1R amino acid sequences against other marsupial orthologues and identified a likely causal southern marsupial mole specific "in-frame stop codon at position 160, in place of a highly conserved arginine residue (R160X) ... ." 

Associated gene:

Symbol Description Species Chr Location OMIA gene details page Other Links
MC1R Notoryctes typhlops - no genomic information (-..-) MC1R Ensembl

Variants

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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.

Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.

OMIA Variant ID Breed(s) Variant Phenotype Gene Allele Variant Type Variant Effect Source of Genetic Variant Pathogenicity Classification* Reference Sequence Chr. g. or m. c. or n. p. Verbal Description EVA ID Year Published PubMed ID(s) Acknowledgements
1848 Coat colour, wildtype MC1R nonsense (stop-gain) Naturally occurring variant Not currently evaluated reference sequence the normal cream coat colour of marsupial moles is likley due to an MC1R in-frame stop codon at position 160  2025 41119986

* Variant pathogenicity for single gene diseases as evaluated by an expert panel of the International Society of Animal Genetics (ISAG) Animal Genetic Testing Standardization Standing Committee

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Cite this entry

Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2025). OMIA:001199-37699: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70

Reference

2025 Sauermann, R., Fancourt, B., Faulkner, T., Shute, H., Reid, D., Pask, A.J., Feigin, C.Y. :
Loss-of-function mutations in ASIP and MC1R are associated with coat colour variation in marsupials. Biol Lett 21:20250302, 2025. Pubmed reference: 41119986. DOI: 10.1098/rsbl.2025.0302.

Edit History


  • Created by Imke Tammen2 on 23 Oct 2025
  • Changed by Imke Tammen2 on 23 Oct 2025